SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5917

Length: 2631 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene5917
CGTCGTGACCTTGGCTGTCACTCAGGTACTGGGTTGAATTCTGGTGCCTTCCATCCGAAATCGGCCATGAATTTGCGATTCTGCATGTGCACAGCATCTGACCATGCGGAAGAGGTCCATAGTGGCAAATATATGTTTTGAGCTTCTGGAGAAACTTTGGCCGAGTCAAAGGGATTCGAGGCTGATGAGGGGTAGTCAACAGGTCAAACAGGCCTGCGTGTGATGAAACGGACAGCTGACTGCATTGCTATAGCGCAAACGAAAGCCGTTGCTACACCGAACCTTAAAGAGAAGTCCATTGATTTCATGGGGACCTCCTCTGGAGCATCTTTTCAACAGCAGCAACAGCAAATGCCTCCGCCTCGGCAACAATCTAGGACTCCTGGCCTACAGACCTCTCTTTCCCTTGCATCATCTGAAGCCTGTGGATCAGCAGACCTACGAGGGCCTATTTCCCATCCTGACAATGTGCGTGAGTCTCCCTCAGAGAGTGCAAGCTCACGGGAAACATGGCCTACGGAGCAGACACGAGTGGAGATGGCAGCAGAGCATTCTCGTCACAAGAAGGAAATGGAGAGAGAGAAAGAAACAGAGGAAGAAAGTGAACGGCCAGAGCAGACAGTGGTACATAGAGTAGCTAATTCAGATCGGATCTTGCTTCGAGATGTAGCAGGGGGACGGCTTGATGATATTGCAGAGAGAATGCGTGAGCAGCCAGAGGAATTTCTGGAAGAGCTCAAAGCGGAGCTTCGGGTGATCCTTGAAGGCACAGGAGGTCTTCAACACAGGGAAGAATTTGCCATTTTGCAAAAGCTTGTACAAAGCAGGAGTGATCTTACACCCGAGTCAATGTCTAGGGCACACAGAGTTCAGTTAGAAGTATTTGTTGCTATAAAAACAGGGATTCAAGCGTTTTTGCATCCAGATATCAGTGTCACTCAAACGGTCCTCATTGAGATATTTTCCCACAAACGATGTAGAAATATAGCATGTCAGAGTCAACTTCCTGCGGATGACTGTAGCTGTGAAATTTGTAGCACCAAGAGTGGATTCTGTAGCCTTTGCATGTGTGTTATTTGCAGCAAATTTGACTTTGAAGTGAATACCTGCCGATGGGTGGGCTGTGATACTTGTTCCCACTGGACACACACAGATTGTGCAATCCGTGCTGGACAAATAAGCATGGGTACCAGTCTTAAGGGTGGTACAGGGTCATCTGAGATGCTTTTCAGATGTAGGGCTTGTAAGAGGACATCGGAACTTTTAGGGTGGGTGAAAGATGTGTTTCAGCACTGTGCCCCTGATTGGGACAGAGAAGCCCTCATGAAGGAATTTGATTGTGTTCGGAGGATATTCCATGGAAGTGAGGATGCTAGGGGCAGAAAACTATTTTGGAAGTCTGAAGAATTATTGGAAAGTCTGAAGACTGGAGCTGCTGATGAGGCCAGAGTTTGCAAAGTGATGCAATGTTTCTTTCAAGAGTTAGAGACAGAGGTGGCTAAAAATGTCGAGGGGGAAGAGAGAAGGGTGGTAGCACCTCAAGAAGCTTGCAATCGTATTGCAGATGTGGTGCAGGAAGTTGTAAGGAAGATGGAAGCTGTTGCAGAGGAGAAAGCTCGTGTTTTCAAAAAGGCACGTCTTACATTAGATATGTGTGATAGGGAACTTGAAGACAAAAGCAGAGAGCTTGCAGAGTTGCAATTTGAGAGGCAACGTAAGAAGCAACAGATAGAGGAACTGGAGGCTATTGTTCGATTAAAACAGGCTGAGGCAGATATGTTCCAACTCAAGGCTGATGAAGCTAGACGAGAGGCAGACAGGCTGCAGCGCATTGCGCTTGCAAAATCAGAAAAAGCAGAGGAGGAATATGCTAGCAGATACCTGAAATTACGATTAAATGAGGCTGAAGCAGAGAGAAGATATCTATTTGAAAAAATTCAACTTCAGGAGCATTCACGATCACAGCCAGACCCCTCCCAAATGCTCATGCTGTGCAAAATACAAGATTTGCTCAAAACTGTATACAATGTTCCCAAGACGGAACCACAGAGTCAAACAGATCATTCTGGATCCATTGCTTATAGCAAGGAGTGATCTCTGGTGAAATGTTTATTTGAAAGGACATTTTAGTGGGATTTTGATAAGCGGGATCTCTGTAAAGTCCCTTTTCAGAGTTGCCCAGTTTTTTGAATGGAAGTTGGAACAGTATGTATCTTACACACGTTAAAAAAACGTTTATTAATGATATTATGATGTAAACCGAAATCTATAATTAGATACCTATGTGGGATCTATAACCTTACTTGTGACTGTAACTTCACTTTTGGCATCTCTGAGTTCCACATTGTTTAGAATTATAGAATGCATATAATCTTGGGTATACAAAGAAAGTTGTTGCTACCATTTGAATACAGGAACTGAAGATTTACAATTATATACAGTCCTGACATTTTTAGGGAGCTTTTACTTGAAATAGAACGTAGAACAAACTATTGAGAGTCTAGCATGAGCTCTAAGAGCCTTTGTACAGCATGGTTGGATAAATATAACAGCTTGCTGCGATCTAAGTGGGTGAACATAATTTTAAGCAGAAATATAGTTTTCTGGCCCTTGTTCTTTTTAGTTGAAAAA

Ace file of the UniGene sp_v1.1_unigene5917

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9T0C9_RICCO	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	potyvirus vpg interacting protein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	primary root development	GO:0080022	Biological Process	77%
Blast2go	regulation of gene expression	GO:0010468	Biological Process	77%
Blast2go	maintenance of shoot apical meristem identity	GO:0010492	Biological Process	77%
Blast2go	root meristem specification	GO:0010071	Biological Process	77%
Blast2go	maintenance of root meristem identity	GO:0010078	Biological Process	77%
Blast2go	nucleus	GO:0005634	Cellular Component	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV71

Fln msg:

Fln protein: MKRTADCIAIAQTKAVATPNLKEKSIDFMGTSSGASFQQQQQQMPPPRQQSRTPGLQTSLSLASSEACGSADLRGPISHPDNVRESPSESASSRETWPTEQTRVEMAAEHSRHKKEMEREKETEEESERPEQTVVHRVANSDRILLRDVAGGRLDDIAERMREQPEEFLEELKAELRVILEGTGGLQHREEFAILQKLVQSRSDLTPESMSRAHRVQLEVFVAIKTGIQAFLHPDISVTQTVLIEIFSHKRCRNIACQSQLPADDCSCEICSTKSGFCSLCMCVICSKFDFEVNTCRWVGCDTCSHWTHTDCAIRAGQISMGTSLKGGTGSSEMLFRCRACKRTSELLGWVKDVFQHCAPDWDREALMKEFDCVRRIFHGSEDARGRKLFWKSEELLESLKTGAADEARVCKVMQCFFQELETEVAKNVEGEERRVVAPQEACNRIADVVQEVVRKMEAVAEEKARVFKKARLTLDMCDRELEDKSRELAELQFERQRKKQQIEELEAIVRLKQAEADMFQLKADEARREADRLQRIALAKSEKAEEEYASRYLKLRLNEAEAERRYLFEKIQLQEHSRSQPDPSQMLMLCKIQDLLKTVYNVPKTEPQSQTDHSGSIAYSKE*

Protein Length: 625

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTACTGGGTTGAATTCTGGTGCCTTCCATCCGAAATCGGCCATGAATTTGCGATTCTGCATGTGCACAGCATCTGACCATGCGGAAGAGGTCCATAGTGGCAAATATATGTTTTGAGCTTCTGGAGAAACTTTGGCCGAGTCAAAGGGATTCGAGGCTGATGAGGGGTAGTCAACAGGTCAAACAGGCCTGCGTGTG_-_ATGAAACGGACAGCTGACTGCATTGCTATAGCGCAAACGAAAGCCGTTGCTACACCGAACCTTAAAGAGAAGTCCATTGATTTCATGGGGACCTCCTCTGGAGCATCTTTTCAACAGCAGCAACAGCAAATGCCTCCGCCTCGGCAACAATCTAGGACTCCTGGCCTACAGACCTCTCTTTCCCTTGCATCATCTGAAGCCTGTGGATCAGCAGACCTACGAGGGCCTATTTCCCATCCTGACAATGTGCGTGAGTCTCCCTCAGAGAGTGCAAGCTCACGGGAAACATGGCCTACGGAGCAGACACGAGTGGAGATGGCAGCAGAGCATTCTCGTCACAAGAAGGAAATGGAGAGAGAGAAAGAAACAGAGGAAGAAAGTGAACGGCCAGAGCAGACAGTGGTACATAGAGTAGCTAATTCAGATCGGATCTTGCTTCGAGATGTAGCAGGGGGACGGCTTGATGATATTGCAGAGAGAATGCGTGAGCAGCCAGAGGAATTTCTGGAAGAGCTCAAAGCGGAGCTTCGGGTGATCCTTGAAGGCACAGGAGGTCTTCAACACAGGGAAGAATTTGCCATTTTGCAAAAGCTTGTACAAAGCAGGAGTGATCTTACACCCGAGTCAATGTCTAGGGCACACAGAGTTCAGTTAGAAGTATTTGTTGCTATAAAAACAGGGATTCAAGCGTTTTTGCATCCAGATATCAGTGTCACTCAAACGGTCCTCATTGAGATATTTTCCCACAAACGATGTAGAAATATAGCATGTCAGAGTCAACTTCCTGCGGATGACTGTAGCTGTGAAATTTGTAGCACCAAGAGTGGATTCTGTAGCCTTTGCATGTGTGTTATTTGCAGCAAATTTGACTTTGAAGTGAATACCTGCCGATGGGTGGGCTGTGATACTTGTTCCCACTGGACACACACAGATTGTGCAATCCGTGCTGGACAAATAAGCATGGGTACCAGTCTTAAGGGTGGTACAGGGTCATCTGAGATGCTTTTCAGATGTAGGGCTTGTAAGAGGACATCGGAACTTTTAGGGTGGGTGAAAGATGTGTTTCAGCACTGTGCCCCTGATTGGGACAGAGAAGCCCTCATGAAGGAATTTGATTGTGTTCGGAGGATATTCCATGGAAGTGAGGATGCTAGGGGCAGAAAACTATTTTGGAAGTCTGAAGAATTATTGGAAAGTCTGAAGACTGGAGCTGCTGATGAGGCCAGAGTTTGCAAAGTGATGCAATGTTTCTTTCAAGAGTTAGAGACAGAGGTGGCTAAAAATGTCGAGGGGGAAGAGAGAAGGGTGGTAGCACCTCAAGAAGCTTGCAATCGTATTGCAGATGTGGTGCAGGAAGTTGTAAGGAAGATGGAAGCTGTTGCAGAGGAGAAAGCTCGTGTTTTCAAAAAGGCACGTCTTACATTAGATATGTGTGATAGGGAACTTGAAGACAAAAGCAGAGAGCTTGCAGAGTTGCAATTTGAGAGGCAACGTAAGAAGCAACAGATAGAGGAACTGGAGGCTATTGTTCGATTAAAACAGGCTGAGGCAGATATGTTCCAACTCAAGGCTGATGAAGCTAGACGAGAGGCAGACAGGCTGCAGCGCATTGCGCTTGCAAAATCAGAAAAAGCAGAGGAGGAATATGCTAGCAGATACCTGAAATTACGATTAAATGAGGCTGAAGCAGAGAGAAGATATCTATTTGAAAAAATTCAACTTCAGGAGCATTCACGATCACAGCCAGACCCCTCCCAAATGCTCATGCTGTGCAAAATACAAGATTTGCTCAAAACTGTATACAATGTTCCCAAGACGGAACCACAGAGTCAAACAGATCATTCTGGATCCATTGCTTATAGCAAGGAGTGA___TCTCTGGTGAAATGTTTATTTGAAAGGACATTTTAGTGGGATTTTGATAAGCGGGATCTCTGTAAAGTCCCTTTTCAGAGTTGCCCAGTTTTTTGAATGGAAGTTGGAACAGTATGTATCTTACACACGTTAAAAAAACGTTTATTAATGATATTATGATGTAAACCGAAATCTATAATTAGATACCTATGTGGGATCTATAACCTTACTTGTGACTGTAACTTCACTTTTGGCATCTCTGAGTTCCACATTGTTTAGAATTATAGAATGCATATAATCTTGGGTATACAAAGAAAGTTGTTGCTACCATTTGAATACAGGAACTGAAGATTTACAATTATATACAGTCCTGACATTTTTAGGGAGCTTTTACTTGAAATAGAACGTAGAACAAACTATTGAGAGTCTAGCATGAGCTCTAAGAGCCTTTGTACAGCATGGTTGGATAAATATAACAGCTTGCTGCGATCTAAGTGGGTGAACATAATTTTAAGCAGAAATATAGTTTTCTGGCCCTTGTTCTTTTTAGTTGAAAAA

Fln Alignment:

sp_v1.1_unigene5917___MKRTADCIAIAQTKAVATPNLKEKSIDFMGTSSGASFXXXXXXXXXXXXXSRTPGLQTSLSLASSEACGSADLRGPISHPDNVXXXXXXXXXXXXTWPTEQTRVEMAAXXXXXXXXXXXXXXXXXXXXXXXQTVVHRVANSDRILLRDVAGGRLDDIAERMREQPEEFLEELKAELRVILEGTGGLQHREEFAILQKLVQSRSDLTPESMSRAHRVQLEVFVAIKTGIQAFLHPDISVTQTVLIEIFSHKRCRNIACQSQLPADDCSCEICSTKSGFCSLCMCVICSKFDFEVNTCRWVGCDTCSHWTHTDCAIRAGQISMGTSLKGGTGSSEMLFRCRACKRTSELLGWVKDVFQHCAPDWDREALMKEFDCVRRIFHGSEDARGRKLFWKSEELLESLKTGAADEARVCKVMQCFFQELETEVAKNVEGEERRVVAPQEACNRIADVVQEVVRKMEAVAEEKARVFKKARLTLDMCDRELEDKSRELAELQFERQRKKQQIEELEAIVRLKQAEADMFQLKADEARREADRLQRIXXXXXXXXXXXXXXRYLKLRLNEAEAERRYLFEKIQLQEHSRSQPDPSQMLMLCKIQDLLKTVYNVPKTEPQSQTDHSGSIAYSKE
A9NV71______________MKQTADCIAILQKKTLSTSNLKEKSIDFMGTSSGASFQQQQQQMPPPRQQSRTPGLQTSLSLASSEACGSADLRGPISHPDNVRESPSESASSRETWPTEQTRVEVVAEHSRHKKEMEREKETEEESERPEQTVVHRVANSDRILLRDIAGGGLDVIAERMREQPEEFLEDLKTELRVILEGTGGLQHREEFALLQKLVQGRSDLTPESMSRAHRVQLEVFVSIKTGIQAFLHPDISVTQTVLIEVFAHKRCRNIACQSQLPADDCSCEVCSTKSGFCSLCMCVICSKFDFEVNTCRWVGCDTCSHWTHTDCAIRAGQISMGTSLKGVAGSSEMLFRCRACKRTSELLGWVKDVFQHCALDWDREALMKEFDCVRRVFHGSEDSKGRKLFWKSEELLESLKNGVADEAAVCKVMQRFFQELETEVVKNVEAEERRMIAPQEACNRIADVVQEVVRKMEAVAEEKARVFKKARLTLDMCDRELEDKSRELAELQFERQRKKQQIEELEAIVRLKQAEADMFQLKADEARREADRLQRIALAKSEKAEEEYASRYLKLRLNEAEAERRYLFEKIQLQEHSRLQPDPSQMLMLCKIQDLLKTVYNVPKTEPQSQTDLSGPITYSKE

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
742		80	20		0.995493
789		85		14	0.993533
988	87		12		0.992554
1502	10		90		0.90298
1503			90	10	0.90298
1504		90	10		0.90298
1506	88		11		0.923564
1507	88	11			0.923564
1682	90		10		0.90298
1697	90		10		0.90298
1727	10		90		0.90298
1883	87		12		0.992554
2119			14	85	0.999981
2123	85	14			0.999981
2124	85			14	0.999981
2506		90		10	0.90298
2570		27		72	1.0
2594	16	16			0.988813
2595	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain