SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5909

Length: 560 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene5909
AACCAACTTTCCAGTACATGAAGTAGTTGGTGTAGGATTACCAGAGGAACCCCTTATTGGATTGAGAATAGATCTTGTGCGTACAGATTCACCGCTTTCTCCATTCTCTCCAGGAAATATTACATCCACTGACCGTCTGAAACAAGCGATCAAACGCAGTCAAGACAGACTACAGAAACTGCAGAGATCTGTTGATGAAGTGAAGGCAGTGGAGGCTCCAGTATATGCAGGAAATGGAGAATTTCTCATGAAGATGGCGATTGGTACGCCATCTTTATCTTTTTCTGCAATTCTGGACACCGGCAGCGACCTCACATGGACACAGTGCAACCCCTGCAGTGATTGTTATCGGCAGCCAACTCCAATCTTTGATCCATCCCACTCATCCAGTTACAGTAAGGTCCCCTGCTCAAGTTCTCTTTGCCAAGCTCTTCCGAGGTATGCTTGCAGTGGTTCAAATTGCGAATACTTGTATACTTATGGTGACCAGTCCTCCACGGAGGGTATCCTTGCTTACGAGAGCTTTACCCTTTCTTCTCAATCCCTTCCCCATATTGCGT

Ace file of the UniGene sp_v1.1_unigene5909

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aspartic proteinase nepenthesin-2 n=1 Tax=Nepenthes gracilis RepID=NEP2_NEPGR	-	-	2.0e-39	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	protein	-	-	0.0	68%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase A1	IPR001461	-	68%
Blast2go	Peptidase aspartic, active site	IPR001969	-	68%
Blast2go	Peptidase aspartic, catalytic	IPR009007	-	68%
Blast2go	Peptidase aspartic	IPR021109	-	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXW9

Fln msg: Distance to subject end: 240 aas, your sequence is shorter than subject: 186 - 460

Fln protein: TNFPVHEVVGVGLPEEPLIGLRIDLVRTDSPLSPFSPGNITSTDRLKQAIKRSQDRLQKLQRSVDEVKAVEAPVYAGNGEFLMKMAIGTPSLSFSAILDTGSDLTWTQCNPCSDCYRQPTPIFDPSHSSSYSKVPCSSSLCQALPRYACSGSNCEYLYTYGDQSSTEGILAYESFTLSSQSLPHIA

Protein Length: 187

Fln nts: AACCAACTTTCCAGTACATGAAGTAGTTGGTGTAGGATTACCAGAGGAACCCCTTATTGGATTGAGAATAGATCTTGTGCGTACAGATTCACCGCTTTCTCCATTCTCTCCAGGAAATATTACATCCACTGACCGTCTGAAACAAGCGATCAAACGCAGTCAAGACAGACTACAGAAACTGCAGAGATCTGTTGATGAAGTGAAGGCAGTGGAGGCTCCAGTATATGCAGGAAATGGAGAATTTCTCATGAAGATGGCGATTGGTACGCCATCTTTATCTTTTTCTGCAATTCTGGACACCGGCAGCGACCTCACATGGACACAGTGCAACCCCTGCAGTGATTGTTATCGGCAGCCAACTCCAATCTTTGATCCATCCCACTCATCCAGTTACAGTAAGGTCCCCTGCTCAAGTTCTCTTTGCCAAGCTCTTCCGAGGTATGCTTGCAGTGGTTCAAATTGCGAATACTTGTATACTTATGGTGACCAGTCCTCCACGGAGGGTATCCTTGCTTACGAGAGCTTTACCCTTTCTTCTCAATCCCTTCCCCATATTGCGT

Fln Alignment:

sp_v1.1_unigene5909___TNFPVHEVVGVGLPEEPLIGLRIDLVRTDSPLSPFSPGNITSTDRLKQAIKRSQDRLQKLQRSVDEVKAVEAPVYAGNGEFLMKMAIGTPSLSFSAILDTGSDLTWTQCNPCSDCYRQPTPIFDPXXXXXXXXXXXXXXLCQALPRYACSGSNCEYLYTYGDQSSTEGILAYESFTLSSQSLPHIA
A9NXW9______________SNFPVHEVVGVRLQEEPLIGLRIDLVRTDSPLSPFSPGNISSTERFKRAIKRSQDRLEKLQMSVDEVKAVEAPVYAGNGEFLMKMAIGTPSLSFSAILDTGSDLTWTQCKPCTDCYPQPTPIYDPSQSSTYSKVPCSSSMCQALPMYSCSGANCEYLYSYGDQSSTQGILSYESFTLTSQSLPHIA

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
195	33	66			1.0
217			14	85	0.993533
233	71	14	14		0.984337
238	85		14		0.993533
241	85		14		0.993533
274	28			71	1.0
280		28		71	1.0
313		85	14		0.993533
322	85		14		0.993533
328		85		14	0.993533
331		71	28		1.0
346		22		77	0.999999
350	11	88			0.923564
376	44	55			1.0
381	77			22	0.999999
385	77			22	0.999999
390		11	88		0.923564
394		87		12	0.992554
395	87			12	0.992554
396		12	75		0.975346
398	85		14		0.993533
401		14	85		0.993533
438			66	33	1.0
443			50	50	1.0
463		80		20	0.995493
508		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain