SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5891

Length: 1692 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5891

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Actin, putative	-	-	68%
FL-Next	sp=Actin-related protein 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	67%
Blast2go	actin related protein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	anatomical structure morphogenesis	GO:0009653	Biological Process	77%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	77%
Blast2go	floral organ abscission	GO:0010227	Biological Process	77%
Blast2go	nucleus	GO:0005634	Cellular Component	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8L4Y5

Fln msg:

Fln protein: MEAVVIDAGSSLLKAGYAVPDRNPAMVIPIKMRGIVEDDQSADVEVLQDISVDPIVRGVIKNWDAMEDLLQYVFYTGLGWEVGNEGQVLFADPLLTPKGVREQLVQLMFEAFNVSGYYASEQAVLSIYAAGRISGCAVDVGHGKIDIAPVWEGAVLHNASKKLEIGGMDLTELFARELGKSNPKVSLDLSIVENLKETYACTAEDEKVYEEKSNTFQEEKHTLPDGQVIAIGKERYTVGEALFQPSILGIEEYSIVEQLIRCSSCLPYENQRQILENIVLCGGTPSMSGFEDRFQKEAILASSVRPALVKPPEYMSENMLRNSAWIGGAILAKAVFLQNQHITKAEYDESGPTIIHRKCF*

Protein Length: 362

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTAATTTTGAAAAAAGGATAGTAGGAGAACCCCTTTTTAAGTCTGATAGCCCCCAACCCAAGAAGGTATAGCACAGAAGAATCCATGTTCCTCCTGTTCATAATATCGATTCAGCTGAGTCATATATTTTGAACAGGTTGATAAACCCAGCAGATTGCTGTGAAACCTTTGTTTTAGACACTTCTGTGTATTTTTCGGGTAGCACGTGGAGAGTACCGTAGAGTTAGGATCAGGTAAGGAAAATAGTGAAAATCAGAGCGTTGAACG_-_ATGGAAGCAGTGGTCATCGATGCAGGTTCGAGTCTTCTCAAGGCAGGCTATGCTGTACCCGACAGGAACCCAGCCATGGTAATTCCTATTAAAATGCGAGGCATCGTTGAGGATGATCAATCAGCAGATGTAGAAGTGTTGCAAGATATTAGTGTTGATCCAATTGTCAGGGGTGTTATAAAAAATTGGGATGCTATGGAAGATTTGTTGCAATATGTATTTTATACCGGACTTGGTTGGGAAGTTGGCAATGAAGGGCAAGTTCTATTTGCAGATCCTCTTCTTACTCCAAAGGGCGTGAGAGAGCAGCTGGTTCAACTCATGTTTGAAGCTTTTAATGTGTCGGGATATTATGCATCTGAACAAGCAGTTTTATCAATTTATGCTGCTGGAAGGATATCTGGTTGTGCTGTTGATGTTGGTCATGGAAAGATAGATATTGCACCTGTCTGGGAAGGCGCTGTCTTGCATAATGCTTCGAAGAAATTGGAGATTGGAGGCATGGATTTAACTGAGCTGTTTGCTCGGGAACTTGGCAAATCAAATCCCAAAGTTAGTCTTGATCTATCGATTGTTGAGAATTTGAAGGAGACGTATGCATGCACTGCTGAGGATGAGAAGGTATACGAGGAAAAAAGCAATACATTCCAGGAAGAGAAACATACTCTGCCAGATGGGCAGGTTATAGCAATTGGCAAGGAACGATACACAGTAGGAGAAGCTTTATTTCAACCTTCCATATTGGGAATTGAAGAGTATAGTATTGTTGAGCAACTAATTCGTTGTTCCTCGTGTCTGCCTTACGAGAATCAGAGGCAAATCCTAGAAAATATTGTTCTATGTGGTGGCACACCAAGTATGTCTGGTTTTGAAGATCGTTTTCAAAAGGAAGCAATTCTAGCATCATCAGTCCGTCCTGCACTTGTAAAGCCTCCTGAATATATGTCAGAGAACATGTTGAGGAATTCAGCTTGGATTGGAGGTGCTATCTTGGCCAAAGCGGTCTTCCTCCAGAATCAACATATCACAAAGGCAGAGTATGACGAATCTGGGCCAACTATCATTCATAGGAAATGCTTCTAA___AATATCAATTTATCACTCTTATGCATACAAAAGTTGTTATTTTTCATTGTGTTGGATATCATGTTGAGGAATTTGTTTTAGATTAGAGGTGGGGTCTTGGTGAATGCCATCTTTCCTCATCAGTGTATCACAAACACAATGGATGATGAATCTGGGTCATCTATGATTCATGTGAAATGCTAATAATCACATTTGCAATAAGTGAAGGATGAAGCATCATGAACTTAGAAAATTTCTTTCGAATGAAGATTTTTGTGCACTATGACCCTTTTCTCTTCTCTTAATTATGACAATATGTGTTCTTTTTTACAGACTT

Fln Alignment:

sp_v1.1_unigene5891___MEAVVIDAGSSLLKAGYAVPDRNPAMVIPIKMRGIVEDDQSA---DVEVLQDISVDPIVRGVIKNWDAMEDLLQYVFYTGLGWEVGNEGQVLFADPLLTPKGVREQLVQLMFEAFNVSGYYASEQAVLSIYAAGRISGCAVDVGHGKIDIAPVWEGAVLHNASKKLEIGGMDLTELFARELGKSNPKVSLDLSIVENLKETYACTAEDEKVYEEKSNTFQEEKHTLPDGQVIAIGKERYTVGEALFQPSILGIEEYSIVEQLIRCSSCLPYENQRQILENIVLCGGTPSMSGFEDRFQKEAILASS-VRPALVKPPEYMSENMLRNSAWIGGAILAKAVFLQNQHITKAEYDESGPTIIHRKCF
Q8L4Y5______________MEALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKRMVDDGSSSADNPTTVFEDVTLDPIERGLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPKAIREQLVQLMFETFNVSGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVLEGAVQHIASKRFELGGTELTKLFAQELGKTNPSMNLSMSDVEKLKEQYANCAEDEIAYKKTQNC-EIEQHTLPDGQVISIGRERYSVGEALFQPSILGLEEHGIVEQLVRIISTVSSENHRQLLENTVLCGGTTSMTGFESRFQKEANLCSSAIRPTLVKPPEYMPENLGMYSAWVGGAILAKVVFPQNQHVTKADYDETGPSVVHRKCF

SNPs (tot: 59)

Position	A %	C %	G %	T %	Probability
683	18			81	0.999994
684			81	18	0.999994
691		18	81		0.999994
692	18		81		0.999994
694			18	81	0.999994
696		18		81	0.999994
697	18	81			0.999994
700			90	10	0.90298
703	10		90		0.90298
705		10	90		0.90298
715			11	88	0.923564
716			11	88	0.923564
725	90			10	0.90298
895		66	33		1.0
1010	83		16		0.994512
1038		20		80	0.995493
1060	85	14			0.993533
1066		16		83	0.994512
1067	16		83		0.994512
1068	83	16			0.994512
1069			83	16	0.994512
1085			16	83	0.994512
1117	83			16	0.999991
1118	66	16	8	8	0.999991
1126	83	16			0.999991
1152		85	14		0.999981
1153	85			14	0.999981
1154	85	14			0.999981
1158		14		85	0.999981
1159		14	85		0.999981
1165		14		85	0.999981
1167			14	85	0.999981
1169		14	85		0.999981
1171	85	14			0.999981
1172			85	14	0.999981
1198	86	13			0.999973
1201	86		13		0.999973
1203		86	13		0.999973
1205		13		86	0.999973
1207	86			13	0.999973
1210			13	86	0.999973
1212		86		13	0.999973
1319	59		40		1.0
1350			91	8	0.999766
1356	91			8	0.999766
1427		57		38	1.0
1475			52	47	1.0
1513		53		46	1.0
1515	53		46		1.0
1517		46		53	1.0
1518	46		53		1.0
1562		46		53	1.0
1564	46		53		1.0
1565	46		53		1.0
1570		46	53		1.0
1580	53		46		1.0
1594	46		53		1.0
1602		10		90	0.90298
1614	60			40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain