SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5873

Length: 1074 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene5873 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CTF2A; CTF2A; monooxygenase/ oxidoreductase	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	ctf2a monooxygenase oxidoreductase	-	-	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Monooxygenase, FAD-binding	IPR002938	-	0.0	72%
Blast2go	Aromatic-ring hydroxylase-like	IPR003042	-	0.0	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVM0

Fln msg: your sequence is shorter than subject: 286 - 416

Fln protein: SQIKLELDDGTEILTKALLGCVGFHSVVAKWMGFSEPRYVGHCAYRGLGVYASGQPYEQKVHYIYGKGIRAGYVPLSSTKVYWFIVFNSHSPGPKITDPNLLKREALGLVQNWPKELVGTIEDTPAENFVRTPLVDRWLWPVVGPKSTLGGVALAGDAWHPMTPNLGQGACCALEDSIILARKLAKALDVGKQSQTENGQRVRVPSDYFGGSDIPSQIEEALQGYATERWPRIFSLTVRAYLVGALLQWDNELICSLRNNIVIPRVTLDPLIEHTKYDCGSLNSN*

Protein Length: 287

Fln nts: ACAGTCAAATAAAATTAGAATTGGATGATGGTACGGAGATACTCACCAAGGCTCTTCTTGGTTGTGTTGGTTTTCACTCAGTGGTAGCCAAATGGATGGGCTTCTCAGAACCTCGTTATGTTGGACATTGTGCTTATCGTGGATTGGGAGTTTATGCAAGTGGACAACCTTACGAGCAAAAAGTGCATTACATCTATGGAAAGGGAATCCGTGCTGGCTATGTGCCTCTTTCTTCTACTAAAGTCTATTGGTTTATTGTCTTCAACAGCCATTCTCCAGGTCCAAAGATAACAGACCCAAATCTTTTGAAGAGGGAAGCTCTTGGACTTGTTCAGAATTGGCCTAAGGAACTTGTTGGGACTATTGAGGATACACCGGCTGAAAACTTTGTGAGGACCCCTTTAGTGGATAGATGGTTGTGGCCTGTTGTGGGTCCAAAGTCAACATTAGGAGGTGTTGCACTAGCAGGAGATGCATGGCATCCCATGACGCCAAATCTTGGACAAGGAGCATGTTGTGCACTAGAGGATTCAATTATACTTGCTAGGAAGCTAGCAAAGGCACTTGATGTGGGCAAACAAAGCCAAACTGAAAATGGCCAAAGAGTTAGAGTTCCAAGTGATTATTTTGGAGGTTCTGACATACCGAGTCAGATAGAGGAAGCATTGCAAGGCTATGCCACTGAAAGGTGGCCTCGAATTTTCTCCTTAACCGTCAGAGCCTATCTTGTTGGTGCTCTTTTGCAGTGGGACAATGAGTTGATTTGTTCATTGAGAAATAATATAGTTATACCAAGGGTGACGTTAGATCCCTTAATAGAACACACAAAGTATGATTGTGGTTCGTTGAATAGCAACTAG___TGATGACTTCATTTTATTATTTGAATGTATTAGATGCATATGACATATATGTTGTTTGCCTTGTAGCTATGTACATTGCCTCGAATTCTGATGGAGAGTATAGTCTGTTTTTTGTTCCGAAAGCTAGGGACATTGTAATGATTTGTGTTCCCAAGCGTCTGTTTATGGCTAATTTACAAGGTGACTAAAGTGCTACAATCTAAATATTTCTTTA

Fln Alignment:

sp_v1.1_unigene5873___LELDDGTEILTKALLGCVGFHSVVAKWMGFSEPRYVGHCAYRGLGVYASGQPYEQKVHYIYGKGIRAGYVPLSSTKVYWFIVFNSHSPGPKI-TDPNLLKREALGLVQNWPKELVGTIEDTPAENFVRTPLVDRWLWPVVGPKSTLGGVALAGDAWHPMTPNLGQGACCALEDSIILARKLAKALDVGKQSQTENGQRVRVPSDYFGGSDIPSQIEEALQGYATERWPRIFSLTVRAYLVGALLQWDNELICSLRNNIVIPRVTLDPLIEHTKYDCGSLNS
A9NVM0______________VKLGDGALIKAKVLIGCDGGNSVVADWLGLQAPSLSGRSGIRGLATYPEGHKFGPKVKLYWGEHLRAGFVPCNDKDVYWFTTQSSLPSDSDIGRDPKSILEKAMEILGDYPEEILDIVKKTQIDTLTLTPLSLRWPWAVLFGKLCKGNVCVAGDAMHPMTPDLGQGGCSTLEDAVVLGRCLGEATTV------------------MNGLEEEKKIEEALKKYVEERRWRSFGLISGAYITGVVQQGSGGVITRFLRDKFLSRKLSENLMNQADFDCGTLSS

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
100	75			25	0.996473
107	80	20			0.995493
231	14	85			0.993533
392		85		14	0.993533
453	85		14		0.993533
455		87	12		0.992554
458	12			87	0.992554
459			12	87	0.992554
460		12	87		0.992554
461		12	87		0.992554
464		87	12		0.992554
467		12		87	0.992554
468	85		14		0.993533
471			14	85	0.993533
494			50	50	1.0
506		85		14	0.993533
627			25	75	0.996473
629	75		25		0.996473
632	33			66	0.997452
633		33		66	0.997452
634	33		66		0.997452
635	33		66		1.0
637		33		66	0.997452
638	33			66	0.997452
639	33			66	0.997452
642	66			33	0.997452
645		33	33		0.997753
897			57	42	1.0
912		42		57	1.0
918			42	57	1.0
933		14		85	0.993533
937		85		14	0.993533
990		25		75	0.996473
1000		25		75	0.996473
1002	25		75		0.996473
1003	75	25			0.996473
1004	25	75			0.996473
1005	75		25		0.996473
1009	25			75	0.996473
1010		75	25		0.996473
1011	75		25		0.996473
1012		75		25	0.996473
1013	75	25			0.996473
1016		75	25		0.996473
1017	25			75	0.996473
1018	75	25			0.996473
1019			25	75	0.996473
1031		33		66	0.997452
1058		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain