SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5872

Length: 270 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene5872
AATCGTCGTGACCTTGGCTGACACTCAGGTCAGTTTGGGACTTTGGCTCGCATGCTTCAAGCAGAGCCACCACCAAAAGCTGTAAAAGTCACTGTGAGCAAGAGGGTTCCCTTAACTGGTGAAGAATTAAGAGCATATGAAGAGGAGCAAAGTCGAATAAAAAAAGAGGAAGCTTTAAAAGCAAGCAATGCTAAAGAGGAGGATGCTAAATCCTCTCAGGTTGGTGTGGATGCCATTTCAGATCCAATGGTTATTGATTCTGCACCTGGT

Ace file of the UniGene sp_v1.1_unigene5872

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cleavage and polyadenylation specificity factor, putative	-	-	5.0e-23	69%
FL-Next	sp=Cleavage and polyadenylation specificity factor subunit 2; Oryza sativa subsp. japonica (Rice).	-	-	0.0	72%
Blast2go	cleavage and polyadenylation specificity factor	-	-	6.26966e-24	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	posttranscriptional gene silencing by RNA	GO:0035194	Biological Process	6.26966e-24	82%
Blast2go	DNA binding	GO:0003677	Molecular Function	6.26966e-24	82%
Blast2go	protein binding	GO:0005515	Molecular Function	6.26966e-24	82%
Blast2go	nucleus	GO:0005634	Cellular Component	6.26966e-24	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q652P4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 302 aas, your sequence is shorter than subject: 90 - 738

Fln protein: NRRDLG*HSGQFGTLARMLQAEPPPKAVKVTVSKRVPLTGEELRAYEEEQSRIKKEEALKASNAKEEDAKSSQVGVDAISDPMVIDSAPG

Protein Length: 91

Fln nts: AATCGTCGTGACCTTGGCTGACACTCAGGTCAGTTTGGGACTTTGGCTCGCATGCTTCAAGCAGAGCCACCACCAAAAGCTGTAAAAGTCACTGTGAGCAAGAGGGTTCCCTTAACTGGTGAAGAATTAAGAGCATATGAAGAGGAGCAAAGTCGAATAAAAAAAGAGGAAGCTTTAAAAGCAAGCAATGCTAAAGAGGAGGATGCTAAATCCTCTCAGGTTGGTGTGGATGCCATTTCAGATCCAATGGTTATTGATTCTGCACCTGGT

Fln Alignment:

sp_v1.1_unigene5872___GQFGTLARMLQAEPPPKAVKVTVSKRVPLTGEELRAYEEEQSRIKKEEALKASNAKEEDAKSSQVGVDAISDPMVIDSA
Q652P4______________GQFGTLARMLQVDPPPKAVKVTMSKRIPLVGDELKAYEEEQERIKKEEALKASLNKEEEKKASLGSNAKASDPMVIDAS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
42		20		80	0.995493
184	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain