SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5869

Length: 1829 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5869

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Minor allergen Alt a, putative	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	minor allergen	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	81%

Source	InterPros	Term	Type	Identity
Blast2go	NADPH-dependent FMN reductase	IPR005025	-	81%
Blast2go	Flavodoxin/nitric oxide synthase	IPR008254	-	81%
Blast2go	Flavoprotein WrbA	IPR010089	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMW0

Fln msg:

Fln protein: MGKGGGCVPSSSRKRLPGTSSAKKEDPKADVPREITNDISEKPVEEALGHEDTAPVVEDTASLPPSAPRKLRIFIVFYSMYGHVEALAKKMKEGIDVIEGVEGTLYRVPEILSAQVLEQMRAPPKDESIPVITAEELAGADGLLFGFPTRYGAMAAQMKAFFDSTGNLWREQTLAGKPAGFFVSTGTQGGGQETTAWTAITQLSHHGMLFVPIGYTFGAGMFKMDEIRGGSPYGAGVYAGDGTRQASSVELALAEHQGKYMAAIVKRLVKA*

Protein Length: 273

Fln nts: CGTCGTGACCTTGGCTGTCACTGAACCTTCAACCACAAGCAAAATCCCCGGTTGGGCTGCATGAATTTGACCTGGAAACCAGTTGTTTGCCTACAATTTGACCAGAAAACCAATGGGCACGTAAAATCTGACCAGAAAACCAGTTGGGTATGTTAAATCTGACCAGAAAACGATGTGGCTAGGTGAATCTCGGTTAGAAATAATCTTGATGGTTTCACTCTGATCCGGAAATCATGTGGGCAATTTAAAGAAAATCATCCGGGCTGTTCCAGTGTTCCCCACATGAGCGTTTGTGGGCATTTAGAGTTTTACCATGTGGGCGATAGGTAGCATAGTAATTCCTGCGGGCATAATACAGTTATCGAGATGGCAGAGGAATATGGATAGAGTGATATTTACGGAGAAGCATAAAGTAGGGTATATTTGAAGGAGTCTTCAAGTCAAAACAGAAGGGAGGCTTCATTGGAAATGGCGTCCAGCTGGGGAGGGCAGTGCCAGTCTGCATAGAACAATTCTGATCTGTAATAATATTGAAGAAGTCTTTGAATCTTTGTAAAGGTACAGTCTCTGATTGGGAACTGTGGAGGTGGAATGTAATAAGGAATC_-_ATGGGCAAAGGAGGGGGTTGTGTTCCAAGTTCATCTAGGAAGCGTTTGCCCGGTACCAGTTCCGCTAAGAAGGAAGATCCCAAGGCTGATGTCCCTCGAGAAATTACTAATGACATTTCAGAGAAGCCCGTTGAAGAAGCATTAGGCCATGAGGATACTGCTCCCGTAGTGGAGGATACAGCTTCCTTACCCCCTAGTGCCCCTCGGAAACTCAGAATTTTCATAGTGTTCTATTCCATGTATGGTCATGTGGAAGCATTGGCAAAGAAGATGAAGGAGGGAATTGATGTAATCGAGGGAGTGGAGGGAACTTTGTACAGGGTCCCTGAGATACTCTCGGCCCAGGTTCTGGAGCAGATGCGTGCGCCTCCCAAGGATGAGTCTATTCCTGTCATAACCGCTGAAGAGCTGGCTGGAGCAGATGGGCTGTTATTTGGGTTTCCCACTAGGTATGGTGCAATGGCAGCTCAGATGAAGGCATTCTTTGATTCCACGGGAAATTTATGGAGGGAGCAGACTCTAGCAGGGAAGCCTGCAGGTTTTTTTGTCAGTACCGGTACACAGGGGGGAGGTCAGGAGACTACAGCTTGGACTGCTATTACTCAGTTGTCTCATCATGGAATGCTATTTGTTCCAATTGGCTATACTTTTGGGGCCGGAATGTTTAAAATGGATGAAATTCGTGGTGGTTCACCATATGGTGCAGGGGTTTATGCAGGTGATGGCACAAGACAAGCAAGTAGCGTGGAGCTTGCTCTTGCAGAGCATCAGGGGAAGTACATGGCTGCAATAGTCAAAAGACTTGTTAAAGCTTGA___TTCTTTTCTATGGGCTAGAAAAGGAACTGATTTTTTTATGACTCTGCTTTAAATCTCTTTGAAGTTAGCATATTCGTCTAAAAGTGGTGTGTTCTTTATGATAGGATCTCTTTCTATCATCTGTTAGTGTGTCTCATATATTGCTTTTTGAGAGTAGTTTTTATTTCATAGATTTTTATGTCAGGCATTATTTATGAAGTTTACCACCTTTGTTATTCCAGCCTATTTGCCATCGATTAAATGTATATTGTTTACATTCAATATTGTAATAAAATCTCTCCCGCTCTCTCTCTTATGATTTCACTTACATGTATCAGAATCATTGCATCGACACAGCCTTTTTCATTTACACAATAGATTGTGCGGTACCAGAGACTGACAAATGAATTCACATGTACCTTCAATTC

Fln Alignment:

sp_v1.1_unigene5869___VPSSSRKRLPGTSSAKKEDPKADVPREITNDISEKPVEEALGHEDTAPVVEDTAS-LPPSAPRKLRIFIVFYSMYGHVEALAKKMKEGIDVIEGVEGTLYRVPEILSAQVLEQMRAPPKDESIPVITAEELAGADGLLFGFPTRYGAMAAQMKAFFDSTGNLWREQTLAGKPAGFFVSXXXXXXXXXXXAWTAITQLSHHGMLFVPIGYTFGAGMFKMDEIRGGSPYGAGVYAGDGTRQASSVELALAEHQGKYMAAIVKRLVKA
B8LMW0______________VPSSSRKRLPGVGSSHKEDPNADLPQENNNDISEKPVEEALGHEDPPPILEDAASSLPLSSPRKLRIFVVFYSMYGHVEALAKKMKEGIDAIEGVEGTLYRVPEILSAQVLEQMRAPPKDESIPVITAEELTAADGLLFGFPTRYGAMAAQMKAFFDSTGKLWREQSLAGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKMDEIRGGSPYGAGVYAGDGTRQPSSVELALAEHQGKYMAAVVNRLVKA

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
461			80	20	0.995493
462		80		20	0.995493
504		71		28	1.0
559	86		13		0.999981
560	86			13	0.999981
561	86	13			0.999981
562	13		86		0.999981
563		13	86		0.999981
565	86	13			0.999981
566	13	86			0.999981
1319		6	93		0.999453
1320			6	93	0.999453
1322		6		93	0.999453
1323	93		6		0.999453
1327	93	6			0.999453
1328			93	6	0.999453
1329			93	6	0.999453
1330			6	93	0.999453
1332	93	6			0.999453
1335			93	6	0.999453
1351	3	16		80	1.0
1406	91		8		0.999766
1656		50		50	1.0
1716	11	88			0.923564
1729	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain