SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5860

Length: 250 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene5860
CGTCGTGACCTTGGCTGTCGTGACCTTGGTGTCATCAGGGTAATTGGAGCTATTCCTGGTGTAAACGTAGGTGATCTTTTCTATTTCAGAATGGAGCTATGTGTTATCGGCTTGCATGGGCCTATCATGGCAGGAATAGATTACATCAATGCAAAATTCAGTGAGTGGAGTGAACCTGTGGCTACCAGTATCATTTCTTCTGGGGGATACGAAGATGACGAAGACGACGGCGAAACACTTATTTATACTG

Ace file of the UniGene sp_v1.1_unigene5860

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SET domain protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9IHH8_POPTR	-	-	3.0e-15	55%
FL-Next	sp=Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; Nicotiana tabacum (Common tobacco).	-	-	0.0	62%
Blast2go	set domain protein	-	-	5.25153e-15	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SRA-YDG	IPR003105	-	5.25153e-15	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q93YF5

Fln msg: Distance to subject end: 372 aas, your sequence is shorter than subject: 83 - 704

Fln protein: RRDLGCRDLGVIRVIGAIPGVNVGDLFYFRMELCVIGLHGPIMAGIDYINAKFSEWSEPVATSIISSGGYEDDEDDGETLIYT

Protein Length: 84

Fln nts: CGTCGTGACCTTGGCTGTCGTGACCTTGGTGTCATCAGGGTAATTGGAGCTATTCCTGGTGTAAACGTAGGTGATCTTTTCTATTTCAGAATGGAGCTATGTGTTATCGGCTTGCATGGGCCTATCATGGCAGGAATAGATTACATCAATGCAAAATTCAGTGAGTGGAGTGAACCTGTGGCTACCAGTATCATTTCTTCTGGGGGATACGAAGATGACGAAGACGACGGCGAAACACTTATTTATACTG

Fln Alignment:

sp_v1.1_unigene5860___IGAIPGVNVGDLFYFRMELCVIGLHGPIMAGIDYINAKFSEWSEPVATSIISSXXXXXXXXXXXTLIYT
Q93YF5______________IGNAPGIEVGDIFFFRMELCLVGLHAPTMAGIDYMSVKLTMDEEPLAVSIVSSGGYDDDGGDGDVLIYT

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
62		25	75		0.996473
68	75		25		0.996473
70	75	25			0.996473
72			75	25	0.996473
74	75		25		0.996473
80		25	75		0.996473
85	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain