SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5853

Length: 2163 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene5853
TAATTGCTTAAACCCAAAACCCTCTAACCCTGGGTCTATAATGGTTAGGCGCCTAGTTAAGGGGCAGGAGAACCCTAACACATGCTGGCATGAATCACAAAGAGGCTCTTTTTTTGTTCAGATATATGTGGGAGGGCAGGGCGTTGAATAATAAAGACGATATTTTTCGCTCACATATACATATGTAATAGGCGGAGGAAGGCAGGGCGTTGACCTAAACTTACGGGCCTCAGGGATTTGTCTGTCTGATGCTCCCAGGTCGTTTTCAGATGATATTCATGTCACTGTACGTGGAGCAAAAGAACTGTTGGGGACCTCCTCCATGTGTTGGGCTGAGCGATTTACTGAATGGGCACATTGGTTACTGTCCTTCCACACCGATCGTAGAACTTGTTCACACTTGCTGATGGTCTTCGTGATTTGTTGATGACGCATTTATGATTTGCTGTATTTGCCTCCAAATCTAATAAGCAGTTATATATAGTCATGTTTCTAAAGGCTTTGTGGTCATTGGAAGAAGCTAATAATTGATATCTAGATTCAAGCTGTTGCAAAAATCATATGATTTTTGATTTTTAGGAATTGTAGGATGTCTGCTTTGATTGAGGGGCTGCCAGATGCAGTTTCACTTCAGTGCCTAGCGCGTGTGCCATTCACATTTCATCCTCAACTCCAGTTGGTTTGCCGTGCTTGGCATTCTGCATTACGTAGCACTGAGCTTTTCAAAGCACGTGATGAGGTAGGAGTCACAGAAGAATTGCTTTGTGTGAGTGCATTTGATCCAGAAAATATTTGGCAAGTGTATGATCCACTCAATGATATTTGGACTACTCTCCCTCCATTGCCATCTGACATCAAGCACTTGACGAACTTTGGGGCTGTGTCTGTAGCTGGGAAGCTCTATGTTCTTGGTGGAGGTAGTGATGATGTTGATCCAGGAACAGGTGATCATGGAGGGATTTTCGCAACTGATGAGGTGTGGGCATATGATCCTGTATGCAGAAAGTGGGCTAGACGAGCATCAATGTTGGTTGCTCGTACAATGTTTGCTTGTTGTGTACTGGATAAGAATATTATTGTTGCAGGTGGGTTCACCAATTCTAGGAAGTCTATTTCCAATGCAGAAATATATGATCCAGAGCGAGATATATGGGAACCTATAGCCGAACTTCAACATTCTCATAATTCTGCTTGCTGTGGTTTAGTATTTGAAGGGAAATTGCATGTATTGCATAAGGGCCTTTCGACAGTTCAGATATTTGAGTCATCCGAGCAGAGGTGGAGAGTGGAAGATTATGGTTGGCCACCAGGGCCAATGGCTATGGTGAAAGAAGAATTCTTTGTAGTCAATAATGGCTTCATTATTCGGCAACATAAACCACCAAATTTGAGCAAAGTCATCTGCACTGCACCTGCTTGCTTGTATAAAATAGGATTTGCAGTGATAGGATTGGGAAATGAACTTTATGTGATTGGTGGGGTCATTGGACCAGGTCGACAGAATCTTGATATACAGCGGCTTTCTGACGTGGACATTTTAAGCGTTAAAAATGAACGACCAATATGGCGTCAAGCAACACCAATGACGCGTTGTCAAGGCACTATAGGTTGGCTGTACTGTACTAAGAATATAGTTTGTGTAGCACTTGAATGCTATCTTAAATTTGTGAGTGTTTCAAGGACACTGAATTTAAGTCCAGTGTTCAGGTTAGCGATTCAGTTGATAGAATACAGGTGGTGTAATTTTTTAAAGTATCTTTCCCACTTGGCATACAAATAGCAGTCTTGCAACAAAATGCAACTAAATTGGATTCAGGTAGGAAATCTCAATTAAGACTAATAGAACTTGGAAATTACATATTTATTGTATGGAACTTTGATTTCATTTTAGTATTCACGCCTTGCATTTCTTCGGGTATTAATGAAATATTGTGGAGCAGCTGAAGATGTCACCCTGCATGCTAACTTCACTTTTATGTTTCCTGAAGTTTCAGTAGCAAGCTATTAGATTCCTCTCTTTTTGATTGTGGCCTAATGTTTGTTTGAGTCTCTGGAATCCAACTAATGACATCATTCATGTCTTGCATGAGTGGTTCTAATGGTGCTACAATTGGCCATACAAATGTTGTATATGATCTCTTGGATATTGATATATGAAGTCTT

Ace file of the UniGene sp_v1.1_unigene5853

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	F-box family protein n=3 Tax=Malpighiales RepID=A9PAC1_POPTR	-	-	62%
FL-Next	sp=F-box/kelch-repeat protein SKIP30; Arabidopsis thaliana (Mouse-ear cress).	-	-	57%
Blast2go	f-box family protein	-	-	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9M1W7

Fln msg: your sequence is longer than subject: 397 - 352

Fln protein: MSALIEGLPDAVSLQCLARVPFTFHPQLQLVCRAWHSALRSTELFKARDEVGVTEELLCVSAFDPENIWQVYDPLNDIWTTLPPLPSDIKHLTNFGAVSVAGKLYVLGGGSDDVDPGTGDHGGIFATDEVWAYDPVCRKWARRASMLVARTMFACCVLDKNIIVAGGFTNSRKSISNAEIYDPERDIWEPIAELQHSHNSACCGLVFEGKLHVLHKGLSTVQIFESSEQRWRVEDYGWPPGPMAMVKEEFFVVNNGFIIRQHKPPNLSKVICTAPACLYKIGFAVIGLGNELYVIGGVIGPGRQNLDIQRLSDVDILSVKNERPIWRQATPMTRCQGTIGWLYCTKNIVCVALECYLKFVSVSRTLNLSPVFRLAIQLIEYRWCNFLKYLSHLAYK*

Protein Length: 398

Fln nts: TAATTGCTTAAACCCAAAACCCTCTAACCCTGGGTCTATAATGGTTAGGCGCCTAGTTAAGGGGCAGGAGAACCCTAACACATGCTGGCATGAATCACAAAGAGGCTCTTTTTTTGTTCAGATATATGTGGGAGGGCAGGGCGTTGAATAATAAAGACGATATTTTTCGCTCACATATACATATGTAATAGGCGGAGGAAGGCAGGGCGTTGACCTAAACTTACGGGCCTCAGGGATTTGTCTGTCTGATGCTCCCAGGTCGTTTTCAGATGATATTCATGTCACTGTACGTGGAGCAAAAGAACTGTTGGGGACCTCCTCCATGTGTTGGGCTGAGCGATTTACTGAATGGGCACATTGGTTACTGTCCTTCCACACCGATCGTAGAACTTGTTCACACTTGCTGATGGTCTTCGTGATTTGTTGATGACGCATTTATGATTTGCTGTATTTGCCTCCAAATCTAATAAGCAGTTATATATAGTCATGTTTCTAAAGGCTTTGTGGTCATTGGAAGAAGCTAATAATTGATATCTAGATTCAAGCTGTTGCAAAAATCATATGATTTTTGATTTTTAGGAATTGTAGG_-_ATGTCTGCTTTGATTGAGGGGCTGCCAGATGCAGTTTCACTTCAGTGCCTAGCGCGTGTGCCATTCACATTTCATCCTCAACTCCAGTTGGTTTGCCGTGCTTGGCATTCTGCATTACGTAGCACTGAGCTTTTCAAAGCACGTGATGAGGTAGGAGTCACAGAAGAATTGCTTTGTGTGAGTGCATTTGATCCAGAAAATATTTGGCAAGTGTATGATCCACTCAATGATATTTGGACTACTCTCCCTCCATTGCCATCTGACATCAAGCACTTGACGAACTTTGGGGCTGTGTCTGTAGCTGGGAAGCTCTATGTTCTTGGTGGAGGTAGTGATGATGTTGATCCAGGAACAGGTGATCATGGAGGGATTTTCGCAACTGATGAGGTGTGGGCATATGATCCTGTATGCAGAAAGTGGGCTAGACGAGCATCAATGTTGGTTGCTCGTACAATGTTTGCTTGTTGTGTACTGGATAAGAATATTATTGTTGCAGGTGGGTTCACCAATTCTAGGAAGTCTATTTCCAATGCAGAAATATATGATCCAGAGCGAGATATATGGGAACCTATAGCCGAACTTCAACATTCTCATAATTCTGCTTGCTGTGGTTTAGTATTTGAAGGGAAATTGCATGTATTGCATAAGGGCCTTTCGACAGTTCAGATATTTGAGTCATCCGAGCAGAGGTGGAGAGTGGAAGATTATGGTTGGCCACCAGGGCCAATGGCTATGGTGAAAGAAGAATTCTTTGTAGTCAATAATGGCTTCATTATTCGGCAACATAAACCACCAAATTTGAGCAAAGTCATCTGCACTGCACCTGCTTGCTTGTATAAAATAGGATTTGCAGTGATAGGATTGGGAAATGAACTTTATGTGATTGGTGGGGTCATTGGACCAGGTCGACAGAATCTTGATATACAGCGGCTTTCTGACGTGGACATTTTAAGCGTTAAAAATGAACGACCAATATGGCGTCAAGCAACACCAATGACGCGTTGTCAAGGCACTATAGGTTGGCTGTACTGTACTAAGAATATAGTTTGTGTAGCACTTGAATGCTATCTTAAATTTGTGAGTGTTTCAAGGACACTGAATTTAAGTCCAGTGTTCAGGTTAGCGATTCAGTTGATAGAATACAGGTGGTGTAATTTTTTAAAGTATCTTTCCCACTTGGCATACAAATAG___CAGTCTTGCAACAAAATGCAACTAAATTGGATTCAGGTAGGAAATCTCAATTAAGACTAATAGAACTTGGAAATTACATATTTATTGTATGGAACTTTGATTTCATTTTAGTATTCACGCCTTGCATTTCTTCGGGTATTAATGAAATATTGTGGAGCAGCTGAAGATGTCACCCTGCATGCTAACTTCACTTTTATGTTTCCTGAAGTTTCAGTAGCAAGCTATTAGATTCCTCTCTTTTTGATTGTGGCCTAATGTTTGTTTGAGTCTCTGGAATCCAACTAATGACATCATTCATGTCTTGCATGAGTGGTTCTAATGGTGCTACAATTGGCCATACAAATGTTGTATATGATCTCTTGGATATTGATATATGAAGTCTT

Fln Alignment:

sp_v1.1_unigene5853___LIFRNCRMSALIEGLPDAVSLQCLARVPFTFHPQLQLVCRAWHSALRSTELFKARDEVGVTEELLCVSAFDPENIWQVYDPLNDIWTTLPPLPSDIKHLTNFGAVSVAGKLYVLGGGSDDVDPGTGDHGGIFATDEVWAYDPVCRKWARRASMLVARTMFACCVLDKNIIVAGGFTNSRKSISNAEIYDPERDIWEPIAELQHSHNSACCGLVFEGKLHVLHKGLSTVQIFESSEQRWRVEDYGWPPGPMAMVKEEFFVVNNGFIIRQHKPPNLSKVICTAPACLYKIGFAVIGLGNELYVIGGVIGPGRQNLDIQRLSDVDILSVKNERPIWRQATPMTRCQGTIGWLYCTK
Q9M1W7______________MCYRQETMSGLLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCVCAFDPENIWQVYSPNCDRWLTLPLLPSRIRHLAHFGAVTTAGMLFVLGGGSDAVSPVTGDHDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQGKIVVAGGFTTCRKSISGAEMYDPENDVWTSIPDLHQTHNSACSGLVVNGKVHVLHKGLSTVQVLESVKLGWDVKDYGWPQGPMVVVEDVLYVMSHGLVFKQE--GDTWKMVASASEFKRRIGMAMTSLSDEVLIVGGVIGPDRLNWDIKPLSDVDALTVGNDRPAWRSVAPMTRCRGTI--LGCTQ

SNPs (tot: 61)

Position	A %	C %	G %	T %	Probability
201	85			14	0.993533
204		85	14		0.993533
205	85		14		0.993533
236	28		71		1.0
256		87		12	0.992554
257		87	12		0.992554
259		12	87		0.992554
260		12	87		0.992554
262		87		12	0.992554
265		12		87	0.992554
267			12	87	0.992554
272	87	12			0.992554
274		12	87		0.992554
343		14		85	0.993533
344			14	85	0.993533
346	85	14			0.993533
347		85	14		0.993533
351	85			14	0.993533
355		14	85		0.993533
356	14			14	0.984337
357		85	14		0.993533
358	85			14	0.993533
361		14		85	0.993533
363		14	85		0.993533
364	14		85		0.993533
462		75		25	0.996473
772		12		87	0.999964
776	87	12			0.999964
781	87	12			0.999964
792	85			14	0.999981
793	85	14			0.999981
1125	83			16	0.994512
1128		83	16		0.994512
1129	83		16		0.994512
1202	16			83	0.994512
1203		16	83		0.994512
1205		16	83		0.994512
1206	16		83		0.994512
1239	83		16		0.994512
1240			16	83	0.994512
1400	88		11		0.999937
1401	88			11	0.999937
1402	88	11			0.999937
1405		88	11		0.999937
1407		11		88	0.999937
1410			88	11	0.999937
1411		88	11		0.999937
1412	88		11		0.999937
1588	11			88	0.923564
1594	88		11		0.923564
1625	12			87	0.992554
1626		12	87		0.992554
1806	88		11		0.923564
1807	88			11	0.923564
1810	88		11		0.923564
1812	88	11			0.923564
1817	88	11			0.923564
1822		11	88		0.923564
1823			88	11	0.923564
1824		11		88	0.923564
1975		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain