SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5852

Length: 983 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5852

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	50S ribosomal protein L5, putative; K02931 large subunit ribosomal protein L5	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	50s ribosomal protein l5	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	77%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	77%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	77%
Blast2go	membrane	GO:0016020	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L5	IPR002132	-	77%
Blast2go	Ribosomal protein L5, conserved site	IPR020929	-	77%
Blast2go	Ribosomal protein L5 domain	IPR022803	-	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQ27

Fln msg:

Fln protein: MAGATLMAECGRIMALGLEFYQLSFTNCNTQFPLAISWNKRLTRRPAVTRALASIAVEEKEEAATKPPTPKLKVEYSEKIIPILKEEFKYTNLLQVPKVEKVVVNCGIGEAAQNAKSLEGAIKDLSLLTGQRPVKTRAKKAIAGFKLREGVPVGLAVTLRGNLMYNFLDRLINLGLPRTRDFQGVNPNSFDGHGNYNIGVREQSVFPEIQSDSIGSTRGMDICITTTAKTDSEAQKLLALMGMPFREGVAPVVERKKKRRVNPKDFKGRYKR*

Protein Length: 274

Fln nts: GGA_-_ATGGCGGGAGCCACATTGATGGCTGAGTGCGGGAGAATCATGGCGCTGGGACTGGAATTTTATCAATTATCTTTCACCAACTGTAATACCCAATTTCCTCTTGCTATCTCTTGGAACAAGAGGCTAACGAGGAGACCTGCTGTGACGAGAGCATTGGCATCAATTGCTGTGGAAGAGAAAGAAGAGGCAGCAACAAAACCACCAACACCCAAATTGAAGGTCGAGTATTCTGAGAAGATTATTCCCATTCTGAAGGAGGAATTTAAGTACACCAATCTGTTGCAGGTGCCCAAGGTGGAGAAGGTAGTGGTCAACTGTGGGATTGGGGAGGCAGCACAGAATGCCAAGTCGTTGGAAGGGGCAATAAAGGACTTGTCTCTGCTCACCGGTCAGAGGCCTGTGAAGACTCGTGCTAAGAAGGCCATTGCGGGCTTCAAACTCAGAGAGGGTGTGCCTGTAGGCCTCGCGGTCACCTTGCGGGGAAATCTCATGTATAATTTCCTGGATCGACTCATCAATTTGGGACTTCCTAGGACCAGAGATTTTCAAGGTGTGAATCCAAACAGCTTTGATGGACATGGAAACTATAATATCGGTGTCCGTGAACAAAGTGTGTTTCCAGAAATCCAGTCTGACAGTATAGGCAGCACAAGGGGGATGGATATCTGCATCACAACTACAGCAAAAACAGACAGTGAGGCACAAAAACTCCTAGCTCTTATGGGGATGCCATTCCGAGAAGGAGTTGCACCAGTTGTGGAAAGAAAAAAGAAACGGAGGGTGAATCCTAAGGATTTTAAAGGAAGGTACAAAAGGTAA___GTTCATTGGTAATATGTGGGGAGCTCTTACACGATTATTTTGCTGGCAATTACCAAAATTTACTCGGTATTTATGTAATTTTCAACCTTTGGAATGTGAAATTTTACAAAACTGTATTCATAAGGTCTATCAGTAAGTATTAGAAATAAGTGGGGAGCTCT

Fln Alignment:

sp_v1.1_unigene5852___MAECGRIMALGLEFYQLSFTNCNTQFPLAISWNKRLTRRPAVTRALASIAVEEKEEAATKPPTPKLKVEYSEKIIPILKEEFKYTNLLQVPKVEKVVVNCGIGEAAQNAKSLEGAIKDLSLLTGQRPVKTRAKKAIAGFKLREGVPVGLAVTLRGNLMYNFLDRLINLGLPRTRDFQGVNPNSFDGHGNYNIGVREQSVFPEIQSDSIGSTRGMDICITTTAKTDSEAQKLLALMGMPFREGVAPVVERKKKRRVNPKDFKGRYKR
C0PQ27______________MAECGRIMALGLGFYQSSFTNFNTQIPLAIPWNKKPTRRRALTGPLASTVVEEKEKTATKPPPPKLKVEYLGKIVPVLKEEFKYANLLQVPKVEKVVVNCGIGEAAQNAKSLEAAIRELSLLTGQRPVKTRAKKAIAGFKLREGVPVGLAVTLRGNIMYNFLDRLINLGLPRTRDFQGVNPNSFDGHGNYNIGVREQSVFPEIQSDSIGSTRGMDICITTTAKTDSEAQKLLSLMGMPFREGVAPVVVRKKKRRVNPKDFKGRYRK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
889	11	88			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain