SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5847

Length: 2088 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene5847
ATGGGGACTGCACTCATTGCACTCTGCCTGTAACGCAATCGCCAGCATCCTCACCATCCACTGTTCCATGCTTTGTAAGATTCCATGGTGAGAAACCCGATAGAAGTAAAACAACGAATATAACAACTAATATTTGGCTTGTTATGTTTAATGAAAAATGATGGAAGAAACCTCTTGTTCAATGAATTCATGAAAGTGTCAGTCGGTGGGACGAAATCGAACATGATTATCTGCACCGACTAATTACATAGAAAAAGTAATGGAGGTTGAAGCAGGCTACAATAGAACGAAAGGGGTGAGAATTTCTATTGCCTTTTCTTCTGAATCAGAAGCAGAAGAACAAATTAAACACCCATAAAAAACGTCAAAAGGATAGGAGTGCCCAAACCTCATCTCAGAAGATGCAGTGGGTGGCTAAGAACGCCTTCAGTTTTAACAAAAAGAAGGGCAGAAACAAATCGACTGAGCCTGCTCAACCTTCTGCTGTGTTTGAAGAAGATGATGAGAATAGTAAGTTGCAGCAACAGTTTTCTCATCTTTCGGCCACAGAAGCAGAGCAGCAAATGCAAGATGATGATGATAAGGGATGTGCAGAGCATTCTATCGAAGAAACGCTGGTGAGGATGCCAGGAAGAGCGGTGGTGAACTTGGTGGAGGCGGGAGAAGAAGTCAGCGACAGCCCGCAGTTGGGAAGCGGCGAATTTTCCATCGTTCGACTCGTTCAGGGGAATACAGGAATCGCCCTGTTTGTGAATGTTGGGGAAGATGTGCGTTGGCCTCTCACCAAGGACGAGCCCACCCTCAAACTCGACGCCCGTCACTACCTCTTCTCCATACGCCCTCCGCCGGACGAAGAGGCCGCAGATAAAGACGGCACTGAGATACTGAATTACGGCGTGACATTTGCAGACGAAGAGGGTTTGGATTTGCTGGACAGTTTCCTGCAGCAACACGCGTGTCTGTCGTTACCCGCAGAATCCACAGGCGGTGCAGCATCAAAATCCTCAAGATCAGCGAAGGGCGGTTCGAAAGAAAACCCGGAGGCGGCGTACTGGACTGCATTGGCGCCGAGGGTGGAAGACTACAACACTGTGGTGGCCAAGGCCATTGCTGCTGGTTCGGGGCAGATTATCAAGGGTTTATTCCTCTGCACCAACGCTTATTCTTCTCAGGTACAGAACGGCGGAGAATCTGTCAGAAGCCAAGTAACGAAAGCCGAGAGCAAAACGGCCGCAGCCGATTATCAAAAGAAAACGAGTGCTCAAGTAAAGATCAATCCTCGCACAAAGAGAAGTATTCGAAGGGCGAAAAGGCTGTCAAGGATGACAGAAAAACTAAGCGAGAATGTGCTGGCTGGGGTTGTCACAGTAAGCGGTGGGATAACTGCTCCGGTGTTGGGTTCAAAGGCTGGCCAGAAGTTCTTCCGCATGTTGCCTGGGGATGTGCTTCTTGCTTCCTTGGATGCTTTTAACAAAGTTTTGGACGCTGCAGAAATAGTTGGAAAGGATGCTTTGTCAGCAGCTTCTGAGGCTACAGTTGAAATTGTTGCAAACAGATTTGGGGAGGAAGCAGGAGAGGTGACACATGACACATTTGCTGTGGCTGGGCATGCCATTGGAACAGCGTGGAACGTCATAAAGGTCCGGAAGGCCATCAATCCGGCATCAAATGGAACGATATCAGCATCTGCTTTGAAGGCTTTGAAGTTGAAGAAGGCCAGCAAAGCAGTCACTAGTGCATCCAAATGCAAATGATTGCATATATAGCATCTTGCTGGAATTCCTTTGCTACTCTGCATATTTTGTTTTAGATTCTCCCAGCAGTACTAAAATTTTCTATGAATCTCTTTTGGGGTCATATAAAAATTGTGAATTGAAATCTCAGTGGGAGAATTTCTCTGTATTGCATTAACAATGCAAACTGCATAGTTACAAAACATTTCTTACATTTCTTTACTATGGTATATTTAAGATACACGTATTTTATTCAAGACAACTGAAGTGTTCTAATTTTTGTTTTGCAGAACACACCCAAAATATTGATACATTTACAAATCGATATATAACTAAAGAATTTGGTACAAAAAAA

Ace file of the UniGene sp_v1.1_unigene5847

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	senescence-associated protein 12	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	protein	-	-	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Senescence/spartin-associated	IPR009686	-	0.0	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV63

Fln msg:

Fln protein: MQWVAKNAFSFNKKKGRNKSTEPAQPSAVFEEDDENSKLQQQFSHLSATEAEQQMQDDDDKGCAEHSIEETLVRMPGRAVVNLVEAGEEVSDSPQLGSGEFSIVRLVQGNTGIALFVNVGEDVRWPLTKDEPTLKLDARHYLFSIRPPPDEEAADKDGTEILNYGVTFADEEGLDLLDSFLQQHACLSLPAESTGGAASKSSRSAKGGSKENPEAAYWTALAPRVEDYNTVVAKAIAAGSGQIIKGLFLCTNAYSSQVQNGGESVRSQVTKAESKTAAADYQKKTSAQVKINPRTKRSIRRAKRLSRMTEKLSENVLAGVVTVSGGITAPVLGSKAGQKFFRMLPGDVLLASLDAFNKVLDAAEIVGKDALSAASEATVEIVANRFGEEAGEVTHDTFAVAGHAIGTAWNVIKVRKAINPASNGTISASALKALKLKKASKAVTSASKCK*

Protein Length: 452

Fln nts: ATGGGGACTGCACTCATTGCACTCTGCCTGTAACGCAATCGCCAGCATCCTCACCATCCACTGTTCCATGCTTTGTAAGATTCCATGGTGAGAAACCCGATAGAAGTAAAACAACGAATATAACAACTAATATTTGGCTTGTTATGTTTAATGAAAAATGATGGAAGAAACCTCTTGTTCAATGAATTCATGAAAGTGTCAGTCGGTGGGACGAAATCGAACATGATTATCTGCACCGACTAATTACATAGAAAAAGTAATGGAGGTTGAAGCAGGCTACAATAGAACGAAAGGGGTGAGAATTTCTATTGCCTTTTCTTCTGAATCAGAAGCAGAAGAACAAATTAAACACCCATAAAAAACGTCAAAAGGATAGGAGTGCCCAAACCTCATCTCAGAAG_-_ATGCAGTGGGTGGCTAAGAACGCCTTCAGTTTTAACAAAAAGAAGGGCAGAAACAAATCGACTGAGCCTGCTCAACCTTCTGCTGTGTTTGAAGAAGATGATGAGAATAGTAAGTTGCAGCAACAGTTTTCTCATCTTTCGGCCACAGAAGCAGAGCAGCAAATGCAAGATGATGATGATAAGGGATGTGCAGAGCATTCTATCGAAGAAACGCTGGTGAGGATGCCAGGAAGAGCGGTGGTGAACTTGGTGGAGGCGGGAGAAGAAGTCAGCGACAGCCCGCAGTTGGGAAGCGGCGAATTTTCCATCGTTCGACTCGTTCAGGGGAATACAGGAATCGCCCTGTTTGTGAATGTTGGGGAAGATGTGCGTTGGCCTCTCACCAAGGACGAGCCCACCCTCAAACTCGACGCCCGTCACTACCTCTTCTCCATACGCCCTCCGCCGGACGAAGAGGCCGCAGATAAAGACGGCACTGAGATACTGAATTACGGCGTGACATTTGCAGACGAAGAGGGTTTGGATTTGCTGGACAGTTTCCTGCAGCAACACGCGTGTCTGTCGTTACCCGCAGAATCCACAGGCGGTGCAGCATCAAAATCCTCAAGATCAGCGAAGGGCGGTTCGAAAGAAAACCCGGAGGCGGCGTACTGGACTGCATTGGCGCCGAGGGTGGAAGACTACAACACTGTGGTGGCCAAGGCCATTGCTGCTGGTTCGGGGCAGATTATCAAGGGTTTATTCCTCTGCACCAACGCTTATTCTTCTCAGGTACAGAACGGCGGAGAATCTGTCAGAAGCCAAGTAACGAAAGCCGAGAGCAAAACGGCCGCAGCCGATTATCAAAAGAAAACGAGTGCTCAAGTAAAGATCAATCCTCGCACAAAGAGAAGTATTCGAAGGGCGAAAAGGCTGTCAAGGATGACAGAAAAACTAAGCGAGAATGTGCTGGCTGGGGTTGTCACAGTAAGCGGTGGGATAACTGCTCCGGTGTTGGGTTCAAAGGCTGGCCAGAAGTTCTTCCGCATGTTGCCTGGGGATGTGCTTCTTGCTTCCTTGGATGCTTTTAACAAAGTTTTGGACGCTGCAGAAATAGTTGGAAAGGATGCTTTGTCAGCAGCTTCTGAGGCTACAGTTGAAATTGTTGCAAACAGATTTGGGGAGGAAGCAGGAGAGGTGACACATGACACATTTGCTGTGGCTGGGCATGCCATTGGAACAGCGTGGAACGTCATAAAGGTCCGGAAGGCCATCAATCCGGCATCAAATGGAACGATATCAGCATCTGCTTTGAAGGCTTTGAAGTTGAAGAAGGCCAGCAAAGCAGTCACTAGTGCATCCAAATGCAAATGA___TTGCATATATAGCATCTTGCTGGAATTCCTTTGCTACTCTGCATATTTTGTTTTAGATTCTCCCAGCAGTACTAAAATTTTCTATGAATCTCTTTTGGGGTCATATAAAAATTGTGAATTGAAATCTCAGTGGGAGAATTTCTCTGTATTGCATTAACAATGCAAACTGCATAGTTACAAAACATTTCTTACATTTCTTTACTATGGTATATTTAAGATACACGTATTTTATTCAAGACAACTGAAGTGTTCTAATTTTTGTTTTGCAGAACACACCCAAAATATTGATACATTTACAAATCGATATATAACTAAAGAATTTGGTACAAAAAAA

Fln Alignment:

sp_v1.1_unigene5847___MQWVAKNAFSFNKKKGRNKSTEPAQPSAVFEEDDENSKLQQQFSHLSATEAEQQMQDDDDKGCAEHSIEETLVRMPGRAVVNLVEAGEEVSDSPQLGSGEFSIVRLVQGNTGIALFVNVGEDVRWPLTKDEPTLKLDARHYLFSIRPPPDEEAADKDGTEILNYGVTFADEEGLDLLDSFLQQHACLSLPAEXXXXXXXXXXXXXXXXXX-ENPEAAYWTALAPRVEDYNTVVAKAIAAGSGQIIKGLFLCTNAYSSQVQNGGESVRSQVTKAESKT-AAADYQKKTSAQVKINPRTKRSIRRAKRLSRMTEKLSENVLAGVVTVSGGITAPVLGSKAGQKFFRMLPGDVLLASLDAFNKVLDAAEIVGKDALSAASEATVEIVANRFGEEAGEVTHDTFAVAGHAIGTAWNVIKVRKAINPASNGTI
A9NV63______________MQWVARNAFSFNKRKGRNRSTE------THDEDDENSNVQQQFSNFSAMEAEKQMQNDDHE-CGGHSIEETLVRIPGGAVVNLVDAGEEVSDSAQLGSGEFSIVRIVQGNTGIVLFVNVGEDVRWPLTKDEPTLKLDSRHYLFSIRLPPDEEAADKDSSDILNYGVTFADEEGLDSLDSFLQQHACLSLPAESTGGASKSTRATKWGSCDRENPEAAYWTALAPRVENYNSVVAKAIAAGSGQIIKGLFLCTNAYDSQLQKGGESVRGRVTKAESKTGAAADHQKKTSSHAKISPSTKRNIRRAKKLSRMTEKLSENLLAGVVTVSGGVTAPVVGSKAGQKFFRMLPGDVLLASLDAFNKVLDAAEIVGRDALSAASEATVEIVANRFGEEAGEVTHDTFAVAGHAIGTAWNVTKVRKAINPVSNGTI

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
172	25	75			0.996473
175		75	25		0.996473
176			25	75	0.996473
177			25	75	0.996473
657	16		83		0.994512
777		20		80	0.995493
880	88			11	0.923564
882	88			11	0.923564
928		87		12	0.992554
1803		10		90	0.90298
1865		11		88	0.923564
1873	15		85		1.0
1911	84	15			1.0
1917	73		26		1.0
1932	87		12		0.999964
1956	71	14	14		0.999974
1958			35	64	1.0
1972	61		38		1.0
1973		38		61	1.0
1990	22	11			0.999999
2008	20			80	0.995493
2009	20			80	0.995493
2010	20			80	0.995493
2011			20	80	0.995493
2012	20			80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
570	581	GAT GAT GAT GAT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain