SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5844

Length: 3812 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene5844
ATGGGCAGCTTGGAAGTGGAAATTGGAAGTGCTGATGGAACTGGAAACCTTGGACAGATTGATGCATCTGGAAATATGGAAGGTGTGCAAGATGAAAATAGTAATAGAGGACCAGCCCAACCAGAAATTGTTAGAGAGAGCAGTCAAAGTGTGCCTGCACATACTCCCAGTGAGCAGCAGCAAAATACTGTGGCTGCAGAATCTAATTCTATTGATCCTACATTCCTAGAGGCTCTTCCTGAAGAGTTAAGAACAGAGGTGCTTGCTTCCCAGCAAAATCAGGTGGCACAACCTACAAATAGTCAACCACCAGCTGCTGAAGAGATTGATCCTGAATTCCTTGCTGCTCTTCCTCCAGATATACAAGCAGAAGTTCTTGCACAACAACGAGCACAGCGATTGCTTCAATCTACAATACGGTTTAGAATAGGAACAATACTGTTGATATGGATAGTGCTTCAATACTAGCCACGTTCCCTCCTGAACTTCGTACTGAGGTTTTGTTGACATCCTCAGATGCCGTGCTGGCTAATTTACCCGAGGCACTTGTTACTGAGGCTCATAGGTTGCGTCGAAGGTTTGGGTATGACCCAAATGATGATCGATTTGGACCATTTCATAGAGGCAGACGCCATCTATCAGGAATAGGAGGGAGAAATGTTTCCCTTGGTTCAGATAGAGTTGGAAATGCAGGTTCACATAGAACTGTTTTTGGAGACAAATTAAATGAAGCTGATGGCAAACCTTTGGTGGATACCGCAGCTCTTAAAGCAATGCTCCGTCTTCTTCAACTTGTCCAGCCTGTTTATAAAGGACCACTGCAGCGCCTCCTATTTAATGTATGTACCCACAGTGTTACACGAGCTACACTGGTTCAGCTTCTGCTGGATATGCTGATCCCAGATGTGGAAGGATCTACACAAAATGCTTCCTCTTCGACTAGCATATCATCTTATCGCTTATATGGCTGTTTGGGTCATGTGATTTATTCACGGCCACAGTTTTCAGATGGGGTCCCACCTTTGGTATCACGTCGTGTGTTGGAAACTTTGACATATTTGGCTCAAAATCATCCACTTGTTGCAAATCTTCTACTCTATTTAGAACAGCCAGATGCTTCTAAACCTCAACCAGATCAGCATACGGAAAGGGGTAAAGCTTTAATGATTGATGAAGAGAGTCAACCGGAAACTGTAAATAAAGAGATGACAGCCAATTTTCCTATAGTTTTACTTTTAAAACTTCTTAATCAACCTCTCTATTCGAGAAGCATTGCCCATCTCGAACAGGTGATGGGTCTTCTCAAAGTCATAATGAACAATGTTGAAGTCAATGTCCAGTCTCAATCTCAGCTTACAGATTCAGGTCCAAAACCATCTCCTCAGGATGTAACAACTGATGCACAGGTTGATACTCCAGGCTTGGAGATGACCTCTCAGGGGTCAACTTCTGCTGCAGAAAAGAAAGTTGATCCTGGAACAGTGCTGCTCAGTATTCCTGAAACGGAGCTTAGATTATTATCATCTTTGCTGGCATGTGAAGGTTTGTCAGACCTTGCATATTCTCATGCTGCTGATGTATTGATGAAGTTAGTGAAAGTGGCACCTCCCCATCGACATCTTTTCATTACTGAGTTGTCAAATGCTGCAGAAAGATTAAGCAAGGTTGCAGTGGGTGAACTTCAGTGTTTTGGTGAGGCTGAAACCATGCTTCTTTCAAATCAATTGTCTGGTGCTGCAATTCTCAGGGTGCTGCAGGCCTTGAGTTCTCTTGCTTCCTCACTTAACAAGGAAAAGGATGATGAGGTACTGCCTGATAGAGATCATGATGAAAGTGTTACTATAATCAGGAGGTTAAATTCAGCTGTTGAACCTCTATGGCAAGAACTGAGTCTCTGCATCGGTAAGATAGAGAACAGGTCGTCTTCATTGTCTACTGTGTCTGCGTCTTCTGGTTCAAATGGGGTTTTACCTCCTTTGCCACCAGGCACACAAAAGATCTTGCCATATATCGAGGCATTTTTTGTAACATGTGAAAAGTTGCAACCTGGTCAAATGACACCTGCACAGCTAGAATACACCAGTGCTACTGCTAGTGAGGTAAAAGAAGCTGCAAGTTCTTCTGAGTCTTCTTTCCCATCAAGGTCCTTGACAGCTCCGCAGAGAAAGGTTGATGAGAAGGGTATCACCCTAATGAAGTTTGCAGAAAGGCACAGGAGGCTTTTGAATGCTTTTGTTCGTCAAAACCCTGGTTTACTTGAGAAATCTCTCTCTCTCTTGTTAAAAGTTCCACGCTTGATTGAATTTGACAACAAGCGTGCATATTTTCGATCAAGAATGCGACAGCATCAGGATCACCAAAATTATAGTTCTGTTCGTATATCTGTTCGACGAGCATATATCCTGGAAGATTCATACAATCAGCTTCGAATGCGTTCAGCAAGAGATCTAAAGGGGCGTTTGAATGTCAACTTCCAAGGGGAGGAAGGCATTGATGCTGGTGGGCTTACAAGGGAATGGTACCAATCGTTGTCAAGGGTAATCTTTGATAAGGGTGCTTTGCTATTTACAACTGTTGGTAATGAAGCAACGTTCCAGCCGAACCCTAATTCTGGCTACCAAACAGAGCATCTCTCATACTTCAAGTTTATTGGGAGAGTGGTTGCAAAGGCCTTGTTTGATGGTCAGCTTTTGGATGTTCACTTTACACGTTCATTTTACAAACACATTCTTGGAGTCAAAGTTACTTATCATGACATCGAAGCTATTGATCCAGATTACTATAAGAATTTGAAGTGGATGCTTGAGAATGACATAAGGGATATGCCTGATCTTACGTTTAGCATGGATGCGGATGAAGAGAAACTGATACTGTATGAGAGGGAAGAGGTTACTGACCATGAACTGATTCCTGGTGGTCGCAATATCCGAGTGACTGAGGAAAATAAACATGAATATGTTGATCTTGTTGCAGAGCATCGACTCACAACAGCAATACGTCCTCAGATCAATGCTTTCTTGGAGGGCTTCAATGAGTTGATTCCGAAAAACTTGATTTCTATATTTAATGACAAGGAACTTGAGCTTCTCATTAGTGGTCTTCCAGAAATTGATCTGGATGACCTTAGAGCAAACACAGAGTATGCTGGTTACAGTGCAGCATCTCCTGTTATCCAATGGTTTTGGGAGGTGGTACAGAGTTTCAGTAAAGAAGATAGGGCACGTCTTTTACAATTTGTAACAGGCACTTCAAAGGTGCCTCTGGAAGGTTTTAAAGCATTGCAGGGAATCTCAGGGCTCCAAAGGTTCCAGATTCACAAGGCATATGGCAGTCCTGATAGGTTGCCATCAGCTCATACTTGTTTCAATCAATTAGACTTGCCTGAATATCCTTCAAAGGAACAATTGGAAGAACGCTTACTTCTGGCTATTCATGAGGCCAGTGAAGGTTTTGGCTTTGGTTGACAGAAGTTCAAAAAGGTTTAGATGTAGATATGTTCTTGTCTGGAGAAGGAATTAGGAATAAGGAGAGCCCACTTCCTTCTGATTGAAATTTGAAACTTGCTGTATAGTATGTTGAAGGAATATTTGACTGCCAAAGTTTTTTTTTTCTCAAGGCATTCATTAGCCCCACTTTGATGAGGCTTTGTATTTACCATTTTCATGTCAAAATTGCTGTATCGTATCTGAATGAATTCTAAAATAAAATAGTCATCCTGGTTTCAAACAGTTTCTTCAGGAATTCTATTGCGGTTGCAATTTAATGAAATGTTTTGTTGTGTACTTTTTATCTTGGCGTAACATGGTCTGTCA

Ace file of the UniGene sp_v1.1_unigene5844

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	E3 ubiquitin protein ligase upl2, putative; K10592 E3 ubiquitin-protein ligase HUWE1 [EC:6.3.2.19]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	e3 ubiquitin protein ligase	-	-	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	70%

Source	ECs	Term	Type	e value	Identity
AutoFact	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	61%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	70%
Blast2go	nucleus	GO:0005634	Cellular Component	70%
Blast2go	cytosol	GO:0005829	Cellular Component	70%
Blast2go	mitochondrion	GO:0005739	Cellular Component	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	HECT	IPR000569	-	0.0	70%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKQ9

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 1006 - 1032

Fln protein: MDSASILATFPPELRTEVLLTSSDAVLANLPEALVTEAHRLRRRFGYDPNDDRFGPFHRGRRHLSGIGGRNVSLGSDRVGNAGSHRTVFGDKLNEADGKPLVDTAALKAMLRLLQLVQPVYKGPLQRLLFNVCTHSVTRATLVQLLLDMLIPDVEGSTQNASSSTSISSYRLYGCLGHVIYSRPQFSDGVPPLVSRRVLETLTYLAQNHPLVANLLLYLEQPDASKPQPDQHTERGKALMIDEESQPETVNKEMTANFPIVLLLKLLNQPLYSRSIAHLEQVMGLLKVIMNNVEVNVQSQSQLTDSGPKPSPQDVTTDAQVDTPGLEMTSQGSTSAAEKKVDPGTVLLSIPETELRLLSSLLACEGLSDLAYSHAADVLMKLVKVAPPHRHLFITELSNAAERLSKVAVGELQCFGEAETMLLSNQLSGAAILRVLQALSSLASSLNKEKDDEVLPDRDHDESVTIIRRLNSAVEPLWQELSLCIGKIENRSSSLSTVSASSGSNGVLPPLPPGTQKILPYIEAFFVTCEKLQPGQMTPAQLEYTSATASEVKEAASSSESSFPSRSLTAPQRKVDEKGITLMKFAERHRRLLNAFVRQNPGLLEKSLSLLLKVPRLIEFDNKRAYFRSRMRQHQDHQNYSSVRISVRRAYILEDSYNQLRMRSARDLKGRLNVNFQGEEGIDAGGLTREWYQSLSRVIFDKGALLFTTVGNEATFQPNPNSGYQTEHLSYFKFIGRVVAKALFDGQLLDVHFTRSFYKHILGVKVTYHDIEAIDPDYYKNLKWMLENDIRDMPDLTFSMDADEEKLILYEREEVTDHELIPGGRNIRVTEENKHEYVDLVAEHRLTTAIRPQINAFLEGFNELIPKNLISIFNDKELELLISGLPEIDLDDLRANTEYAGYSAASPVIQWFWEVVQSFSKEDRARLLQFVTGTSKVPLEGFKALQGISGLQRFQIHKAYGSPDRLPSAHTCFNQLDLPEYPSKEQLEERLLLAIHEASEGFGFG*

Protein Length: 1007

Fln nts: ATGGGCAGCTTGGAAGTGGAAATTGGAAGTGCTGATGGAACTGGAAACCTTGGACAGATTGATGCATCTGGAAATATGGAAGGTGTGCAAGATGAAAATAGTAATAGAGGACCAGCCCAACCAGAAATTGTTAGAGAGAGCAGTCAAAGTGTGCCTGCACATACTCCCAGTGAGCAGCAGCAAAATACTGTGGCTGCAGAATCTAATTCTATTGATCCTACATTCCTAGAGGCTCTTCCTGAAGAGTTAAGAACAGAGGTGCTTGCTTCCCAGCAAAATCAGGTGGCACAACCTACAAATAGTCAACCACCAGCTGCTGAAGAGATTGATCCTGAATTCCTTGCTGCTCTTCCTCCAGATATACAAGCAGAAGTTCTTGCACAACAACGAGCACAGCGATTGCTTCAATCTACAATACGGTTTAGAATAGGAACAATACTGTTGAT_-_ATGGATAGTGCTTCAATACTAGCCACGTTCCCTCCTGAACTTCGTACTGAGGTTTTGTTGACATCCTCAGATGCCGTGCTGGCTAATTTACCCGAGGCACTTGTTACTGAGGCTCATAGGTTGCGTCGAAGGTTTGGGTATGACCCAAATGATGATCGATTTGGACCATTTCATAGAGGCAGACGCCATCTATCAGGAATAGGAGGGAGAAATGTTTCCCTTGGTTCAGATAGAGTTGGAAATGCAGGTTCACATAGAACTGTTTTTGGAGACAAATTAAATGAAGCTGATGGCAAACCTTTGGTGGATACCGCAGCTCTTAAAGCAATGCTCCGTCTTCTTCAACTTGTCCAGCCTGTTTATAAAGGACCACTGCAGCGCCTCCTATTTAATGTATGTACCCACAGTGTTACACGAGCTACACTGGTTCAGCTTCTGCTGGATATGCTGATCCCAGATGTGGAAGGATCTACACAAAATGCTTCCTCTTCGACTAGCATATCATCTTATCGCTTATATGGCTGTTTGGGTCATGTGATTTATTCACGGCCACAGTTTTCAGATGGGGTCCCACCTTTGGTATCACGTCGTGTGTTGGAAACTTTGACATATTTGGCTCAAAATCATCCACTTGTTGCAAATCTTCTACTCTATTTAGAACAGCCAGATGCTTCTAAACCTCAACCAGATCAGCATACGGAAAGGGGTAAAGCTTTAATGATTGATGAAGAGAGTCAACCGGAAACTGTAAATAAAGAGATGACAGCCAATTTTCCTATAGTTTTACTTTTAAAACTTCTTAATCAACCTCTCTATTCGAGAAGCATTGCCCATCTCGAACAGGTGATGGGTCTTCTCAAAGTCATAATGAACAATGTTGAAGTCAATGTCCAGTCTCAATCTCAGCTTACAGATTCAGGTCCAAAACCATCTCCTCAGGATGTAACAACTGATGCACAGGTTGATACTCCAGGCTTGGAGATGACCTCTCAGGGGTCAACTTCTGCTGCAGAAAAGAAAGTTGATCCTGGAACAGTGCTGCTCAGTATTCCTGAAACGGAGCTTAGATTATTATCATCTTTGCTGGCATGTGAAGGTTTGTCAGACCTTGCATATTCTCATGCTGCTGATGTATTGATGAAGTTAGTGAAAGTGGCACCTCCCCATCGACATCTTTTCATTACTGAGTTGTCAAATGCTGCAGAAAGATTAAGCAAGGTTGCAGTGGGTGAACTTCAGTGTTTTGGTGAGGCTGAAACCATGCTTCTTTCAAATCAATTGTCTGGTGCTGCAATTCTCAGGGTGCTGCAGGCCTTGAGTTCTCTTGCTTCCTCACTTAACAAGGAAAAGGATGATGAGGTACTGCCTGATAGAGATCATGATGAAAGTGTTACTATAATCAGGAGGTTAAATTCAGCTGTTGAACCTCTATGGCAAGAACTGAGTCTCTGCATCGGTAAGATAGAGAACAGGTCGTCTTCATTGTCTACTGTGTCTGCGTCTTCTGGTTCAAATGGGGTTTTACCTCCTTTGCCACCAGGCACACAAAAGATCTTGCCATATATCGAGGCATTTTTTGTAACATGTGAAAAGTTGCAACCTGGTCAAATGACACCTGCACAGCTAGAATACACCAGTGCTACTGCTAGTGAGGTAAAAGAAGCTGCAAGTTCTTCTGAGTCTTCTTTCCCATCAAGGTCCTTGACAGCTCCGCAGAGAAAGGTTGATGAGAAGGGTATCACCCTAATGAAGTTTGCAGAAAGGCACAGGAGGCTTTTGAATGCTTTTGTTCGTCAAAACCCTGGTTTACTTGAGAAATCTCTCTCTCTCTTGTTAAAAGTTCCACGCTTGATTGAATTTGACAACAAGCGTGCATATTTTCGATCAAGAATGCGACAGCATCAGGATCACCAAAATTATAGTTCTGTTCGTATATCTGTTCGACGAGCATATATCCTGGAAGATTCATACAATCAGCTTCGAATGCGTTCAGCAAGAGATCTAAAGGGGCGTTTGAATGTCAACTTCCAAGGGGAGGAAGGCATTGATGCTGGTGGGCTTACAAGGGAATGGTACCAATCGTTGTCAAGGGTAATCTTTGATAAGGGTGCTTTGCTATTTACAACTGTTGGTAATGAAGCAACGTTCCAGCCGAACCCTAATTCTGGCTACCAAACAGAGCATCTCTCATACTTCAAGTTTATTGGGAGAGTGGTTGCAAAGGCCTTGTTTGATGGTCAGCTTTTGGATGTTCACTTTACACGTTCATTTTACAAACACATTCTTGGAGTCAAAGTTACTTATCATGACATCGAAGCTATTGATCCAGATTACTATAAGAATTTGAAGTGGATGCTTGAGAATGACATAAGGGATATGCCTGATCTTACGTTTAGCATGGATGCGGATGAAGAGAAACTGATACTGTATGAGAGGGAAGAGGTTACTGACCATGAACTGATTCCTGGTGGTCGCAATATCCGAGTGACTGAGGAAAATAAACATGAATATGTTGATCTTGTTGCAGAGCATCGACTCACAACAGCAATACGTCCTCAGATCAATGCTTTCTTGGAGGGCTTCAATGAGTTGATTCCGAAAAACTTGATTTCTATATTTAATGACAAGGAACTTGAGCTTCTCATTAGTGGTCTTCCAGAAATTGATCTGGATGACCTTAGAGCAAACACAGAGTATGCTGGTTACAGTGCAGCATCTCCTGTTATCCAATGGTTTTGGGAGGTGGTACAGAGTTTCAGTAAAGAAGATAGGGCACGTCTTTTACAATTTGTAACAGGCACTTCAAAGGTGCCTCTGGAAGGTTTTAAAGCATTGCAGGGAATCTCAGGGCTCCAAAGGTTCCAGATTCACAAGGCATATGGCAGTCCTGATAGGTTGCCATCAGCTCATACTTGTTTCAATCAATTAGACTTGCCTGAATATCCTTCAAAGGAACAATTGGAAGAACGCTTACTTCTGGCTATTCATGAGGCCAGTGAAGGTTTTGGCTTTGGTTGACAGAAGTTCAAAAAGGTTTAGATGTAGATATGTTCTTGTCTGGAGAAGGAATTAGGAATAAGGAGAGCCCACTTCCTTCTGATTGAAATTTGAAACTTGCTGTATAGTATGTTGAAGGAATATTTGACTGCCAAAGTTTTTTTTTTCTCAAGGCATTCATTAGCCCCACTTTGATGAGGCTTTGTATTTACCATTTTCATGTCAAAATTGCTGTATCGTATCTGAATGAATTCTAAAATAAAATAGTCATCCTGGTTTCAAACAGTTTCTTCAGGAATTCTATTGCGGTTGCAATTTAATGAAATGTTTTGTTGTGTACTTTTTATCTTGGCGTAACATGGTCTGTCA

Fln Alignment:

sp_v1.1_unigene5844___PRLIEFDNKRAYFRSRM----RQHQDHQNYSSVRISVRRAYILEDSYNQLRMRSARDLKGRLNVNFQGE-----EGIDAGGLTREWYQSLSRVIFDKGALLFTTVGNEATFQPNPNSG-YQTEHLSYFKFIGRVVAKALFDGQLLDVHFTRSFYKHILGVKVTYHDIEAIDPDYYKNLKWMLENDIRDMPDLTFSMDADEEKLILYEREEVTDHELIPGGRNIRVTEENKHEYVDLVAEHRLTTAIRPQINAFLEGFNELIPKNLISIFNDKELELLISGLPE-IDLDDLRANTEYA-GYSAASPVIQWFWEVVQSFSKEDRARLLQFVTGTSKVPLEGFKALQGISGLQRFQIHKAYGSP-DRLPSAHTCFNQLDLPEYPSKEQLEERLLLAI
B8LKQ9______________PFLVPFTNRVQIYTSQLAAARQQNSFHTPFVRHRIRIRRNRAVEDAFSELNGLTGEELRGMIRVIFVNEFGVEEPGVDGGGIFKDFMENITKTAFDIQYGLFKETADHLLY-PNPASGTIHPEHLQYFEFLGKILGKAMFEGILVDIPFATFFLSKLKEKHNYLHDLPSLDPELYRSLLSLKHYD-GDVSELGLYFVSENN-----EYGEQKEEEMLPGGKDMQVTNENVIKFIHLMANHHLNSQIRNQSSYFLRGFQQLIQSDWLNMFNEHELQLLISGSTEGMDVDGLRSNVHYAGGYSEDHPVIEMFWEVIKQFSLEQQKKFLKFVTGCSRGPLLGFKYLEPPFCIQRAAPEDAPEEVLDRLPTSATCVNLLKLPPYRSKDVLRSKLLYAI

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
421	33		66		1.0
439	33	66			0.997452
1362	14			85	0.993533
1364	85		14		0.993533
1365		85	14		0.993533
1366	85		14		0.993533
1567	83			16	0.994512
1798	85	14			0.993533
2136		11		88	0.923564
2403			75	25	1.0
2451	87			12	0.992554
2453	87		12		0.992554
2521			88	11	0.923564
2524	88		11		0.923564
3006		87		12	0.992554
3137	85		14		0.993533
3724		55		44	1.0
3731		11		88	0.923564
3733	87		12		0.992554
3791	50	25			0.995533

SSRs (tot: 1)

Start position	End position	Sequence	Length
2265	2277	TC TC TC TC TC TC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain