SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5827

Length: 1887 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5827

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DOF domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIX8_MALDO	-	-	4.06377e-44	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Blast2go	f-box family protein	-	-	7.28675e-44	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNI1

Fln msg:

Fln protein: MMLSPVQVCMDSTDWPQGMMQERGFRPSGEDLLSCSRPMLERRLKPQPEQALKCPRCESTNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGTLRTVPVGGGCRKNKRAKRSVAADQPVFSTQSEPSTSGAPSASALPIGLDHQADLNPATNSSSYFNLAANNTPASTEANLAFARMQQAARQEGRSVLPNCNNSDFLGLSCGSSTQSSFGPQNSLNNLNPISSLTNLSALSALNSLKFSFAGLEDFHGNSNRSDQGSLAVPSEWQLPSETTLFEQAGDSTNYWSGGAWGDLTSYGSSVSPQI*

Protein Length: 303

Fln nts: TCAACGGTTCACGGGTTCCACCCCAGCCGCCTGCATCATCATTTCTTTTGTTTTTTCTGCTGTAAATTCTGCGTTGTGTGTGGTATTTATATGTGATTGTAAGGCCGGTAGTTGTTGGTCATACTTTGTGGTTAGTGTGGCTGTGGAGAAGTAGGTGGTTTTTGAGTACTTGGTTTACAGAACA_-_ATGATGCTCAGCCCTGTTCAGGTCTGCATGGATTCCACTGATTGGCCACAGGGCATGATGCAGGAGAGAGGGTTTAGGCCAAGTGGCGAAGACCTGCTTTCATGTTCACGTCCAATGCTTGAGAGAAGGCTGAAACCTCAGCCTGAACAAGCCCTGAAATGCCCAAGATGCGAGTCCACCAACACCAAGTTCTGCTACTACAACAACTACAGTTTATCACAACCTCGTCATTTCTGCAAGACCTGCAGAAGGTACTGGACCAAAGGAGGGACTCTCAGGACTGTACCTGTTGGTGGGGGTTGCAGAAAGAACAAGAGGGCTAAGAGAAGTGTAGCTGCAGATCAGCCCGTGTTTAGCACACAAAGTGAGCCATCCACCTCAGGTGCACCCTCTGCAAGTGCCCTTCCAATTGGCTTGGACCATCAAGCTGACCTTAATCCTGCTACTAATTCAAGCTCTTATTTCAATCTTGCTGCAAATAATACTCCTGCATCGACTGAGGCTAATCTAGCATTTGCCAGAATGCAACAAGCTGCAAGGCAAGAGGGTCGGTCTGTTCTACCCAACTGCAATAACTCTGATTTTTTGGGTCTCTCCTGTGGCAGCAGTACCCAATCCTCCTTTGGACCCCAGAATAGTCTAAATAACCTTAACCCCATATCCTCACTGACCAATCTTTCAGCACTGAGTGCCCTGAATTCATTGAAGTTTAGTTTTGCAGGTCTGGAGGATTTCCATGGGAACTCAAATAGAAGTGATCAAGGATCCCTAGCAGTTCCCTCAGAATGGCAGCTTCCATCAGAGACCACACTCTTTGAGCAGGCTGGAGACTCTACAAATTACTGGTCTGGTGGAGCATGGGGTGATCTCACAAGCTATGGCTCATCTGTAAGCCCACAAATCTAA___AAACCATGTCCCAGTTGGGTACTTGACATGAAAAAAAATGTTCTCAAGTAGCAAGTTTTTATGGCATAGACTTTATGTTTTGGCCCTTGATGACAGTTCCCAGCATGGTGTAGGCATGGTTGTCAAATTTATTGATGACAAACATGACATCTCTGCTATTTTTTTTGCTGCTGATTATACTGCAGTTGGCACCGTACATGGAACATAAATACAGTAGATGATGGATGATGATAAGAAGGAATCACTTCTATGGAACTCAATATTTGAAGCTTCTTTTTGTTCAGCTTCAAGATTAAGCTCCTTGGTGAATCCCCTAAACAACATGTGACCTTGAAAGGAGTTACTTCTAATTCTATGTTCTGCCTGGGCTGACTGATTCTGCAAGTCTGTGAAGCAAATACAGTTTGTAGTCAGGCTGCCCATGAATGTTCTTTTCATTTGGTTAGTTTCGTATGTATAAATAGATGGTGTTCTCTTTTCAGACAGTTTGGGATTTCATGCAAAGCTTTTGCCCAAGTTTTTGGGGCATCAGGGTCTTTTGGAGCTACGTTCCAAAAGGAATATGTATATGTGCATTCCTCTCCGGAAGGAGGAGAGTTGAGAATAGTTTGCAGAAGCCTTAGGATAGTAAATTAGTGTTGGCATAGAATAAAACCTCTGTTCTTTCCACGAGGAACTGATTATTATATAGAATCTGCATAAAAGCTTATGCTTCATACTTTGCTATGAATGCAAGAAATAGCTTTTAGTATGCATTAGTGTGTTCAGATAAAATAAATGTCAGGCTGTGTTTCTCG

Fln Alignment:

sp_v1.1_unigene5827___GMMQER-GFRPSGEDLLSCSRP--MLERRLKPQPEQA-LKCPRCESTNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGTLRTVPVGGGCRKNKRAKRSVAADQPVFSTQSEPSTSGAPSASALPIGLDHQADLNPATNSSSYFNLAANNTPASTEANLAFARMQQAARQEGRSVLPNCN-NSDFLGLSCGSSTQS-SFGPQXXXXXXXXXXXXXXXXXXXXXXXXKFSFAGL-------------EDFHGNSNRS---DQGSLAVPSEW------QLPSETTLFEQAGDSTNYWSGGAWGDLTSYG-SSVSP
A9NNI1______________GMMQEEMGVLEGTGDMMDSYPPRQLLDRRLKPQGDQEILKCPRCDSTNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGSLRSVPVGGGCRKNSKRNNNSNNNGKRSNGEACSSTTGSDQLS---------PSLGGVSNDCKYYN-------GDGEELIGINYVNSLRQVDHEAAFAGCSINSGVYGIQANDHQSSQSFQPYHLPTALQSLQGSLIQAPNGFNQAANRGDLGLVQQQAAGAVSYDREAYHPYINMSLDHSDGHSRAPQQHKSNNIIENPPQGLVYE-----GGYWNGGVWPDLSAYGLSNINP

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
729	83		16		0.994512
739			16	83	0.994512
1230	88		11		0.923564
1251	90			10	0.90298
1252	14			85	0.993533
1258			14	85	0.993533
1260		14	85		0.993533
1261		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain