SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5787

Length: 1602 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene5787 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U0H1_PHYPA	-	-	1.0e-38	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	protein	-	-	0.0	63%

Source	GOs	Term	Type	Identity
Blast2go	protein transport	GO:0015031	Biological Process	63%
Blast2go	establishment of localization in cell	GO:0051649	Biological Process	63%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	63%
Blast2go	plastid	GO:0009536	Cellular Component	63%
Blast2go	thylakoid	GO:0009579	Cellular Component	63%
Blast2go	membrane	GO:0016020	Cellular Component	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Twin-arginine translocation protein TatA/B/E	IPR003369	-	0.0	63%
Blast2go	Twin-arginine translocation protein TatB-like	IPR003998	-	0.0	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P230

Fln msg:

Fln protein: MATAGPWALSSPCLCSSVFPTIGFRSKHKWVSSGLSSQHLCRATHTQKAHFEPLDRTRIAFFIGWNARTHLGQSFLFNAPNRGFHRQKKGSGVQASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKSLRAFQPTIKELQEVSREFKNTLEQEIGLDEFRSTTINPSNSAPPTLQRETLVEQNGPPGRKPYSAEDYLRVSQEEIKALVPEEKPKGSEPEQLENSPPSVAQSGSEVTKQSSSEFPELSPNRTGSVNGKGEDGKDM*

Protein Length: 269

Fln nts: CGTCGTGACCTTGGCTGTCATGGGGGTGGAGGGATAAATGCGAAGTTCACGTGAGTGGGATTGAACTGGTTGTAAACGAAATTGTAAGCTACTACAGAAATTGGGCTGACGTTCTGTATTATCAGTGGAATTACAAAAAAGTGAACGACATTCCGCGCAAATTTCTGGGATCAAGGAAAGGAGAGGATCGGGT_-_ATGGCTACGGCAGGGCCATGGGCACTGAGTTCACCCTGCTTGTGCTCTTCCGTGTTTCCTACAATCGGTTTTCGCTCTAAACACAAGTGGGTTTCTTCCGGACTGTCCTCTCAACACCTCTGCAGGGCCACGCATACACAAAAAGCTCATTTTGAGCCACTCGACAGAACGAGGATTGCCTTCTTCATAGGTTGGAATGCTCGCACCCATTTGGGTCAGTCATTCCTATTCAACGCACCAAACAGAGGTTTCCACAGGCAGAAAAAGGGCAGTGGTGTGCAGGCCTCATTGTTTGGAGTAGGGGCCCCTGAGGCACTGGTGATTGGAGTTGTAGCTCTGCTCGTCTTTGGGCCGAAGGGTCTTGCAGAGGTTGCTCGAACACTTGGAAAATCTCTCCGGGCATTTCAACCCACAATAAAAGAGCTTCAGGAAGTATCAAGGGAGTTCAAGAACACACTGGAGCAGGAAATTGGTCTAGATGAATTCCGTTCTACTACTATCAATCCCTCCAATTCTGCTCCTCCAACCTTGCAGCGTGAAACATTGGTGGAACAGAATGGGCCTCCTGGCAGAAAACCATACTCCGCTGAAGATTACTTGAGAGTTTCCCAAGAAGAAATAAAAGCATTAGTTCCAGAAGAGAAACCTAAGGGTTCAGAACCTGAACAGTTGGAGAATAGCCCTCCCTCGGTTGCACAATCAGGATCTGAAGTGACTAAGCAATCGAGTTCTGAATTTCCTGAGCTTTCTCCAAATAGAACTGGCAGTGTGAATGGGAAGGGCGAGGATGGAAAGGATATGTAA___ATTGAAGGTCTGTTGGCTGCGGTGTATTGCTTTTGTTTCTTGTAAAATATATTCTACAATGTATATCTGTAAAGGGCTTATGATTCTGCTAGATGCTTTCTATGGTTTGAGGTATCCGTGGCTTCCAATTTTGAAACTTCTGCTCCCATGTGGATCGCTGATCTTGTGAGATTCTTGTTATGCAACCTCCTTACAATTTTCTATCACTCTCTATTTGACAGTTCTTTTCCAGGGTCATTTTGCACGATCAAGGCTGTAGTCCAAGTCTAGAGAATATATCAAAGTTAAGGCCACTTGACACAAAGTGAGAAATTAAGATAAGCTCCTAATCAGGTCATATTCAGTCCGCCCGCTATTTCTGAATTGGGTTATATTCAGACTGACAACTAAGTTAAAGGAAGTCCACTCTTTGTGGTGCAGCCCTTGGTTCACTTGAAATGAAAGAAACCATTTTGAGTATTAATTTATTTTATATTTGCCATAAAGCATTAAATACTTAATGCTCTTTAGCTTTACATGCATAGTTCATTAAAAATCAATGGTAGCTTCAAAGTTCGCAATTTTTACAAAATTCAAAGATGAGAAGGTTAAGTTGCTCAAGGCTT

Fln Alignment:

sp_v1.1_unigene5787___MATAGPWALSSPCLC-----SSVFPTIGFRSKHKWVSSGLSSQHLCRATHTQKAHFEPLDRTRIAFFIGWNARTHLGQSFLFNAPNRGFHRQKKGSGVQASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKSLRAFQPTIKELQEVSREFKNTLEQEIGLDEFRSTTINPSNSAPPTLQRETLVEQNGPPGRKPYSAEDYLRVSQEEIKALVPEEKPKGSEPEQLENSPPSVAQSGSEVTKQSSSEFPELSPNRTGSVNGKGEDGKD
A9P230______________MTMAGPWALSSPCLCKPPHDSSVFPTISSHSNHKWVSSMLSSQHLCRATHAQKAHFETLYRTRLAFFIGWNARTHLGQSFLLNAPSRGFHRQKKGSAVQASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGRSLRAFQPTIKEIQEVSREFKNTLEQEIGLDEFRSTTINPSNSSPQTLQRETMVEQNGPPGRKAYSTEDYLRVSEDEIKTLVPEEKPKGSEPAQLDNSPPSFAQPRSEVTEQSSYEFTEPSPNRTRSENGKGKDDKN

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1090	87			12	0.992554
1251	10	90			0.90298
1547		25		75	1.0
1562		83		16	0.994512
1574		80		20	0.995493
1583		80		20	0.995493
1584		80	20		0.995493
1585	20	80			0.995493
1586	80		20		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain