SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5765

Length: 1102 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5765

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative zinc transporter n=1 Tax=Solanum lycopersicum RepID=A1YIQ6_SOLLC	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	zinc transporter	-	-	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc/iron permease	IPR003689	-	0.0	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSJ3

Fln msg:

Fln protein: MHFLSDSVETFEDLTDKTYPFAFMLCTAGYLVTMLADIIIVWVYEKQDQSSSIHSASPLQEPARNDEIGSGVHKYIDQTTLNFEDHPTANRGVHMMAHPTPNGGVPHMMTASLVKKTSVGDSLLLILALCFHSVFEGIAIGVSATKRDAWKALWTVCLHKIFAAIAMGIALLRIIPNRPFLSCAAYAFAFAISSPIGIAIGILIDATTEGRVADWIYAISMGFACGVFVYVAINHLLMKGLIQSPLKGVIRFDKPFYKYLAVLTGAGLIAVVMNWDT*

Protein Length: 279

Fln nts: ACAGATGGAACGAGAGCTTTCTTTTGCTGGGAACTCAGTTCGCAGCTGGCGTCTTCCTGGGAACGGCTTGA_-_ATGCATTTTCTCAGTGATTCTGTAGAAACATTTGAAGATTTGACAGACAAGACATATCCTTTTGCGTTCATGCTCTGTACTGCAGGCTACCTTGTTACCATGCTCGCAGACATCATCATCGTTTGGGTGTATGAAAAGCAAGATCAGTCATCCAGCATACACAGTGCAAGTCCTCTTCAAGAACCGGCTCGTAATGATGAAATCGGAAGTGGAGTGCACAAATATATTGACCAGACAACGCTGAATTTTGAGGACCACCCAACAGCAAATAGAGGAGTGCACATGATGGCCCACCCAACACCCAATGGAGGAGTGCCGCACATGATGACGGCCTCACTGGTAAAGAAGACCTCCGTCGGAGACAGTTTATTGCTCATACTCGCACTGTGTTTTCATTCTGTATTTGAAGGGATCGCCATCGGTGTTTCAGCGACGAAGCGTGACGCCTGGAAAGCTCTGTGGACAGTGTGTTTGCACAAGATATTCGCTGCAATTGCAATGGGCATAGCCCTGTTGCGCATAATTCCCAACAGGCCCTTCCTCTCCTGTGCAGCGTACGCCTTCGCCTTTGCGATTTCGAGCCCCATTGGAATTGCCATTGGAATACTTATTGATGCCACTACAGAGGGCCGAGTGGCAGACTGGATTTATGCAATCTCAATGGGTTTTGCGTGCGGTGTTTTCGTTTATGTTGCCATCAACCATCTTCTGATGAAAGGATTAATACAGAGCCCTCTGAAAGGTGTGATTCGCTTTGACAAACCATTTTACAAATATTTGGCTGTACTCACTGGAGCTGGACTGATTGCAGTTGTAATGAATTGGGATACCTAG___TGGTAATGAATTGAGACACTTCTTAGCTAGCTGCAAACATATAGAAAATATCAATACCATTACAATCTACTGTTACATAAGTTTCTTATAAATGAAAATAGTTTCTTGGAGAGATTAAAAGTTTCTTCCACTGTCTCACAACGATGTACAGTGCAAGTTGTTCCGTTTACATGTTCTGTGGGAACACGTTACAAAGT

Fln Alignment:

sp_v1.1_unigene5765___MHFLSDSVETFEDLTDKTYPFAFMLCTAGYLVTMLADIIIVWVYEKQDQSSSIHSASPLQEPARNDEIGSGVHKYIDQTTLNFEDHPTANRGVHMMAHPTPNGGVPHMMTASLVKKTSVGDSLLLILALCFHSVFEGIAIGVSATKRDAWKALWTVCLHKIFAAIAMGIALLRIIPNRPFLSCAAYXXXXXXXXXXXXXXXXXXXXTTEGRVADWIYAISMGFACGVFVYVAINHLLMKGLIQSPLKGVIRFDKPFYKYLAVLTGAGLIAVVMNWD
A9NSJ3______________MHFLSDSAETFEDLTDKTYPFAFMLCTAGYLVTMLADLIIVWVYEKQDQSSSIHSANPLQKTAGMGDTESGV------TTLNSQD-------LH-----TVDGGVQMVKAVSLVKKTSIGDSLLLVLALCFHSVFEGIAIGVAATKHDAWRALWTVCLHKIFAAIAMGIALLRIIPDRPFLSCAAYAFAFAISSPVGIGIGILIDATTQGRVADWIYAISMAFACGVFVYVAINHLLLKGVIQNPNKGAIPFDKPFYKYLAAVTGAGLIAVVMNWD

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
230	80		20		0.995493
231		80	20		0.995493
232	80		20		0.995493
233		80	20		0.995493
260		40		60	1.0
264	80		20		0.995493
268	80		20		0.995493
311	40		60		1.0
336		20	80		0.995493
550		66		33	1.0
807	66		33		0.997452
889			33	66	1.0
924	77		22		0.999999
1090			75	25	0.996473
1107		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain