SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5762

Length: 1458 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5762

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF547 domain containing protein	-	-	6.0e-34	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	protein	-	-	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF547	IPR006869	-	0.0	73%
Blast2go	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	0.0	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS42

Fln msg: your sequence is shorter than subject: 309 - 648

Fln protein: EFGRKLATKHFFHHVLDENVFEDGNHPYRFMEHDPVVTAKCYNFTGCTNDMKPKPPTEIAARLRSLTQAIYEAYISDDGKHVDYRSIRGSEEFIRYLKVIEELHRIDLHDLSREEKLAFFINLYNMMAIHAIVLWGYPDGPLERRRFFGDFKYLIGGYSYSLSAIQNGVLRGNKRPPYNLIKPFGLKDKRIEVALRDPEPLVHFSLVSGSRSSPAIRCYSPGSIDEELRLAGRIFFDDGGFLIDGENKLASVSKILNWYSVDFGKNETEVLKFVANYLEPSKSEQLLELLNSNQLKVTYQNYDWALNC*

Protein Length: 310

Fln nts: GAATTCGGAAGAAAACTTGCCACAAAACACTTTTTCCACCATGTTCTAGATGAGAATGTCTTCGAAGATGGAAATCATCCTTATCGTTTCATGGAACACGATCCAGTTGTTACCGCCAAGTGCTATAATTTTACAGGATGTACAAATGACATGAAGCCCAAACCCCCAACTGAAATTGCAGCTAGACTGCGGAGCTTGACCCAAGCAATTTATGAAGCTTATATCTCTGATGATGGCAAGCATGTAGATTACAGAAGCATTCGTGGCAGTGAGGAGTTTATAAGGTACTTGAAAGTGATTGAGGAACTTCACAGAATTGATTTGCATGACTTATCCAGAGAAGAAAAACTTGCATTCTTCATCAATCTATATAATATGATGGCAATTCATGCAATTGTGCTGTGGGGTTACCCTGATGGACCTCTCGAGCGGAGAAGATTTTTTGGTGATTTTAAATATCTCATTGGTGGCTATTCTTATTCACTCTCGGCCATTCAAAATGGGGTTTTGCGTGGCAACAAAAGACCTCCTTACAATTTGATAAAGCCTTTTGGGTTAAAAGACAAGCGCATCGAGGTTGCTTTGCGAGATCCAGAACCTTTGGTTCATTTTTCCTTAGTGTCTGGTTCAAGATCAAGCCCTGCCATCAGATGCTATTCACCAGGAAGTATTGATGAAGAATTAAGGCTAGCTGGAAGGATATTTTTTGACGATGGTGGTTTTTTGATTGATGGGGAGAACAAGCTTGCTTCAGTTAGCAAGATTTTGAATTGGTACAGTGTGGACTTTGGTAAAAACGAAACAGAAGTCTTGAAATTTGTTGCAAACTATCTGGAGCCCTCCAAGTCAGAACAGCTATTGGAATTATTGAATAGTAATCAGCTGAAGGTCACATACCAGAATTATGATTGGGCTTTGAATTGCTAA___GTCTAATGTTATCTGTCATGCTCTCAATCAATTCAGTTCATAGTCATCTATCAAATGGGAGCTGTATCCTAAGTTTAATGGGTTAGAAGCTAAATTAGTATTAAAATTTGAAATTTTGCTGATGGTAAGTTGAGATAGAAGATCAAAAGATCTGCTGCCTAAGTCTTTTATGCCAAGTCTTGTGAATAAGTAAGCAACACGGACCTTTTTTTGTTTTTGAAGCTCTAGAAAGTATGTGGTTCAAGCCCTTACAGGCTATAAGGCAAATGTGGCATGCCATTTCAGTATGTTATTTGTTTGCCGATTTATTAAAATATATTCGATGGCTTCTTGTTATTTGAACTGAGTCAATTTCTTGCACTTGAACTTCTATTCCTCTCCCCCTTGGGAAATTGTAAGAAGGATCTTGTTCCTATGTAGTTGCATTTATGTTAGAAGGAACATGGTCCTTACATGATTTTCATGTAGATGCGTTAATTTCAAAGCTATGATGGTATTGCTTCGATTATTTCAAAGCTAAATGGGAAAGTT

Fln Alignment:

sp_v1.1_unigene5762___YLKVIEELHRIDLHDLSREEKLAFFINLYNMMAIHAIVLWGYPDGPLERRRFFGDFKYLIGGYSYSLSAIQNGVLRGNKRPPYNLIKPF---GLKDKRIEV--------ALRDPEPLVHFSLVSGSRSSPAIRCYSPGSIDEELRLAGRIF
B8LS42______________FRSMVEHLERIDPSQLQRESKLAFWINVHNALVMHAYLAYGIPRNILKRMPLFQKAAYNIGGHSVSANTIEHSILCCKTYRPAQWLETLLSTGARIKAGEVRRTFGRRYGLDDPEPLVFFALCGGAHSDPAVRIYTAKNVHDELETAKKEF

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
681	81		18		0.999994
701	11		88		0.923564
713		88		11	0.923564
734		13		86	0.999973
736			86	13	0.999973
737		13	86		0.999973
739	86			13	0.999973
742	86	13			0.999973
744	86			13	0.999973
745	86			13	0.999973
747		86	13		0.999973
748		13		86	0.999973
752	13			86	0.999973
945	5		3	91	0.999882
947	91	5			0.999882
951	3			96	0.988113
952		94	5		0.999993
956	94	5			0.999994
960	93		5		0.999973
1031			16	83	1.0
1377		14		85	0.993533
1392		85		14	0.993533
1403	25		75		0.996473
1417		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain