SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5720

Length: 1942 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5720

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Integrin-linked protein kinase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TJT6_VITVI	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	protein	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	75%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	75%
Blast2go	cytoplasm	GO:0005737	Cellular Component	75%
Blast2go	nucleus	GO:0005634	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	75%
Blast2go	Ankyrin repeat	IPR002110	-	75%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	75%
Blast2go	Protein kinase-like domain	IPR011009	-	75%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	75%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	75%
Blast2go	Ankyrin repeat-containing domain	IPR020683	-	75%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMC7

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 71 aas, putative chimeric sequence, your sequence is shorter than subject: 352 - 502

Fln protein: SEESMQLLYLANGGDVAAIEAFLDSGADVNSADFDRRTALHVAACEGRKDVVALLLSRGANVNYQDRWGSTPLADAIHYKNYDVCKLLEENGAVLPMAPMHVTNERDIPEYEVDPKELDLTNSVQITKGTYRIGLWRGIRVAVKTFGEDVLTDGEKVSAFRDELALLQRVRHPNVVHVTGAVTQSIPMMIITEYLPKGDLSAYLKRKGSLKPLKAVRFALDIARGMNYLHENKPAPIIHRDLKPPNILRDDSGHLKVADFGISKLLKVPSETVREDGLSKFGETSLRYMAPEVLRNEAYDNKVDVFSFALIVQEMIEGCQPFDSMSDKDIVRAYSQDDIRPPFKTSARHYP*

Protein Length: 353

Fln nts: TCGGAAGAGAGCATGCAGCTTCTTTATCTGGCCAATGGAGGGGATGTTGCTGCCATAGAGGCTTTTCTTGACTCAGGAGCAGATGTCAACTCGGCGGATTTCGATCGCCGGACTGCCCTTCATGTGGCCGCTTGTGAGGGTCGTAAGGATGTGGTCGCTCTACTTCTCAGCAGAGGAGCCAACGTCAATTACCAAGATCGATGGGGCAGCACGCCACTTGCAGATGCTATACATTATAAAAACTATGATGTGTGCAAGCTTTTGGAGGAAAATGGTGCAGTGCTGCCGATGGCTCCTATGCATGTCACAAATGAACGTGACATTCCGGAGTATGAAGTTGATCCCAAGGAGTTGGATCTTACAAACAGTGTTCAAATTACAAAGGGAACATACCGAATTGGATTATGGCGGGGAATACGAGTTGCTGTAAAGACATTTGGTGAGGATGTCCTTACGGATGGTGAAAAGGTGAGCGCATTTAGGGATGAGTTGGCCTTATTGCAGAGAGTACGACATCCAAACGTTGTTCACGTGACAGGGGCTGTCACTCAGAGCATTCCCATGATGATTATCACAGAGTACTTACCAAAGGGTGATCTGTCTGCATATTTGAAGCGAAAAGGATCATTGAAACCACTGAAGGCAGTGAGATTTGCCCTTGATATTGCAAGGGGAATGAATTATTTACATGAGAATAAACCAGCACCTATTATCCATCGTGATCTCAAGCCTCCAAATATACTTCGGGATGATTCAGGGCATCTGAAAGTTGCAGATTTTGGAATAAGCAAACTGCTTAAGGTGCCATCTGAAACTGTTCGAGAAGATGGGTTATCAAAATTCGGTGAAACTTCTTTGAGGTATATGGCACCAGAAGTTCTTCGAAATGAAGCATATGACAACAAAGTGGATGTCTTTTCCTTTGCTTTGATTGTGCAAGAGATGATTGAAGGCTGCCAACCATTTGATTCAATGTCAGATAAAGATATTGTAAGAGCCTATTCTCAAGATGATATTAGGCCTCCGTTCAAAACTTCTGCAAGGCACTATCCGTGA___AGGATTGAAAGAGCTAATTGAGGAATGCTGGGATAAAGATCCTGATCAAAGGCCAACATTTGCAGAAATTATTCACAAGTTAGATACAATCAATTATTTCTGCAATCGTCGTGACCTTGGCTGTCACTCATCTTTTGCAATAAATTCTGAGAAAGTACAAATAAGGTTAAGCCAGGTAAATATCTTAGGAATCTTGTGTTGAGGCATTCACGACGTCAAAGTGATCATTCGGAGTCTAGCACCCTTTCGGGTGATAAATGACTAACTTCATTCCAAATTCTCCCGGATAATATCTGGAAGCCTGTTTCAGACCTTCCATTTTCTGAGGCAAGATGAACCTTTATGGAAATTATTTGCACATCTGTGGACTGGTCAATGCCATGGTACATGAACTTTTAGAAGATTCTTCGAAGGAACTATCTACAATAAGAGCAATCCTATATCCCTCATTAATTTCTGTATTCTGGTATTGAGAAGTGAAGAAAGTCATTAAGATTTGTATTTTTCAAAGCACGTATTGTGGTGCATCGGAATATGACACTAAAGATGTGCGATTTGAATGTTTTGTCGTCATAAAACTGAAGACACCTCTGCTGCCAATATCTGTATATTATATTTGTTATTTATTGGGTGGGTGATCACTTGTGGTCATTCTCTGTAATATCTTTTCAGGTTTTTTGAGAGTTTGGACTGGAAACTAATTTGGAAATGCTTCATAAAATCTAAATTGTCAAGGGAGTTCGTTCTGGAGACTAAGAATTCTTGTTTTTAATAGAGAATGCGTGTACACCATCAGAACAGTAGCATGCAAAATTTCTTCACCAGGAACATTGACGAGACAAAAGCTAAGTTGGCTATTTCTTAGTACGAATCATATGATGTACGT

Fln Alignment:

sp_v1.1_unigene5720___EESMQLLYLANGGDVAAIEAFLDSG-ADVNSADFDRRTALHVAACEGRKDVVALLLSRGANVNYQDRWGSTPLADAIHYKNYDVCKLLEENGAVLPMAPMHVTNERDIPEYEVDPKELDLTNSVQITKGTYRIGLWRGIRVAVKTFGEDVLTDGEKVSAFRDELALLQRVRHPNVVHVTGAVTQSIPMMIITEYLPKGDLSAYLKRKGSLKPLKAVRFALDIARGMNYLHENKPAPIIHRDLKPPNILRDDSGHLKVADFGISKLLKVPSETVREDGLSKFGETSLRYMAPEVLRNEAYDNKVDVFSFALIVQEMIEGCQPFDSMSDKDIVRAYSQDDIRPPFKTSARHYP
B8LMC7______________DTTMQMLFLACNGDVKGVEGLLNEGKVDVNSADFDDRTALHVASCEGHVEVVKLLLRRGANVNARDRWGSTPIADAKHYGNTKICNILKAKGAKMPKTPMSVSNPLQIPEYELNPTELSFPQGAETSKGSYQLAKWNGTRVAVKILNKDYYSDPESIKSFKNELTMLQKVRHPHVVQFVGAVTQNVPMMIIAEYLPNGDLSSYLQKKGRLQPAKAVRVALEIARGMNYLHESKPEAIIHCNLKPRNILRDSGGHWKVTDFGLSQLLKLSSDKVREWHPRPLDDTSRLYMAPEVYKNEAFDRSVDAFSFGHILYEMIEGTPPFHPKSPEEVSKMMALEDKRPAFKLKPKHYP

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
531	83			16	0.994512
532		16	83		0.994512
533			16	83	0.994512
535			16	83	0.994512
536	16			83	0.994512
537		16		83	0.994512
538	83	16			0.994512
539			83	16	0.994512
540			83	16	0.994512
541			16	83	0.994512
861	80		20		0.995493
1071	80		20		0.995493
1103	40		60		1.0
1168	33			66	1.0
1169	33	66			1.0
1170	33		66		1.0
1171	33			66	1.0
1172	33		66		1.0
1176	33	66			1.0
1182	33	66			1.0
1183			33	66	1.0
1186		66	33		1.0
1187	66		33		1.0
1193	11	88			0.923564
1238			11	88	0.923564
1807			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain