SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5711

Length: 1430 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5711

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[I] COG0657 Esterase/lipase	-	-	7.0e-18	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	protein	-	-	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Alpha/beta hydrolase fold-3	IPR013094	-	0.0	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P086

Fln msg:

Fln protein: MESSSSSAIIFEAPGFLRIYEDGKVERLVDRETVPPSSEDDNFDEEKNGVASKDVVLDPQTGVFVRLYLPRLEVMDGKGKVPVLLYFHGGGFCIGSAASPVYHSYLNKVVAEAKVICVSVDYRKAPEHRLPAAYDDCFGALEWLDRQAMALNGVSVDPWLASHADFSNVFLAGDSAGANILHQVGIRAGERKWDGVCLQGAILVHPFFGGEERIGCELEADAEVEGFNIMTDAIWSISLPAGADKDHPFRNPVGPRSPALSTLVYPRTLVFVAGKDLLRARGIWYFESLKKAGKEVDLVMTEDETHVFHLFNQKSENTFRMLKRISDFMHSSAILSGH*

Protein Length: 340

Fln nts: ATGGGGAAATAGTAGGGTATTGGTGGTAGGAGAATATCCTGGAAACGAGAAGCTGTTGGCAGCATTAACATTGGCACTACGGCTTTTCTCTGTGCCTGCTCTGGTTTCAGCTGCTCTCAACATAATT_-_ATGGAGTCCTCGTCGTCTTCAGCCATCATCTTTGAGGCTCCTGGTTTTCTCAGAATCTACGAGGACGGAAAGGTTGAGCGATTGGTTGACAGAGAAACAGTTCCCCCTTCTTCAGAGGACGATAATTTCGACGAGGAGAAGAATGGAGTGGCATCCAAGGACGTGGTGTTGGATCCCCAAACAGGGGTGTTCGTTCGTCTCTATCTCCCTCGTCTCGAGGTGATGGATGGAAAAGGAAAAGTTCCGGTGCTTCTCTACTTTCATGGAGGGGGTTTCTGCATCGGATCAGCTGCGTCGCCAGTTTATCATAGCTATCTTAATAAAGTGGTTGCAGAGGCCAAGGTGATATGCGTCTCGGTGGATTACAGGAAAGCGCCCGAGCATCGCCTCCCTGCGGCTTATGACGATTGTTTCGGTGCTCTTGAATGGCTTGACCGCCAAGCAATGGCACTGAATGGGGTCTCTGTGGATCCGTGGCTCGCTTCACACGCAGATTTCAGCAACGTTTTCTTGGCAGGTGACAGCGCCGGTGCCAACATCTTGCACCAGGTGGGTATCCGTGCTGGTGAAAGGAAATGGGATGGGGTCTGTTTACAAGGAGCCATTCTGGTTCACCCCTTCTTTGGCGGAGAAGAACGAATCGGCTGCGAATTAGAGGCGGATGCGGAGGTGGAGGGTTTTAATATAATGACTGATGCAATCTGGAGTATCTCTCTCCCCGCGGGAGCCGACAAAGATCACCCTTTTCGCAACCCAGTTGGACCCCGTTCTCCGGCTCTGTCCACTCTGGTGTATCCTCGGACTCTGGTATTTGTGGCAGGGAAGGATCTGCTGCGAGCTCGAGGTATTTGGTACTTCGAATCCCTAAAAAAGGCCGGGAAAGAAGTCGATCTCGTGATGACGGAAGATGAAACCCACGTATTTCATCTGTTCAATCAGAAATCAGAGAATACGTTCCGCATGCTGAAACGTATTTCAGATTTCATGCATTCCTCGGCCATTCTCTCTGGCCACTGA___GACAGCTGTGACGTATGTTATCAAATATCTACGGATATAGCGTAGATTTAGTTTACTTCGTCGTCGTAAATTCTCTTTGGTTTTATCCCCATCTTGTTATTAGCTAAGAGGTTACACTTTCAACTGATTCCTTGTAGATTTTGGAGGCGGAACATCACTTGGTTGGCCTCACGCTAAGGAATTCAAGCCACAAGTTACGCATTATGAAGTGTATCTGCCCTCTTTGATGTTATAATTTACCTCCTCTTTTTCATAATTTTTACAGTTGTAGAGAGGTGCTTATGAC

Fln Alignment:

sp_v1.1_unigene5711___MEXXXXXAIIFEAPGFLRIYEDGKVERLVDRETVPPSSEDDNFDEEKNGVASKDVVLDPQTGVFVRLYLPRLEVMDGKGKVPVLLYFHGGGFCIGSAASPVYHSYLNKVVAEAKVICVSVDYRKAPEHRLPAAYDDCFGALEWLDRQAMALNGVSVDPWLASHADFSNVFLAGDSAGANILHQVGIRAGERKWDGVCLQGAILVHPFFGGEERIGCELEADAEVEGFNIMTDAIWSISLPAGADKDHPFRNPVGPRSPALSTLVYPRTLVFVAGKDLLRARGIWYFESLKKAGKEVDLVMTEDETHVFHLFNQKSENTFRMLKRISDFMHSSAILSGH
A9P086______________MDSSSSLPIVSEAPGFIRIYEDGTVERLVDREIVPPSSQDDNFDEEKEGVASKDVVLDPQTGVFVRFYLPRLEVTNGKGRVPVLLYFHGGGFCIGSAASPVYHHYLNQVATDAKVICLSVDYRRAPEHRLPAAYDDCFGVLEWLDRQAMVLEGVSVDPWLASHADFSKVFLAGDSAGANILHQVGIRASGRNWDGLCLQGAILVHPFFGGAERIGCELLAEAEVDAFNTMTDAIWSISLPAEADRDHPFCNPVGPRSPALSTLVYPRMLIFVAGKDLLRDRGIWYYEEIKKAGIDTDLVMTEGESHVFHLFNPKSENVPLMMKRIFDFIHSSSENPNH

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
108		16		83	0.994512
270	75		25		0.996473
317		25	75		0.996473
354	20		80		0.995493
427		83		16	0.994512
434		50		50	1.0
492		14		85	0.993533
499	85		14		0.993533
515		85		14	0.993533
614	85	14			0.993533
773		85	14		0.993533
840		10		90	0.90298
1132	85			14	0.993533
1262		60	40		1.0
1268	60		40		1.0
1278		40		60	1.0
1279	40		60		1.0
1308	44			55	1.0
1342	71			28	1.0
1398		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain