SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5696

Length: 1423 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene5696 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phospholipid-transporting atpase, putative n=1 Tax=Ricinus communis RepID=B9RVV5_RICCO	-	-	72%
FL-Next	sp=Phospholipid-transporting ATPase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	67%
Blast2go	aminophospholipid atpase	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	81%
Blast2go	cell part	GO:0044464	Cellular Component	0.0	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P98205

Fln msg: your sequence is shorter than subject: 287 - 1107

Fln protein: RDLGCHSFFSFVSGVSGTSLFNSFSLMAYNVFYTSVPVLMSVLDKDLSERTVMQHPQILFYCQAGRLLNPSTFAGWFGRSLFHAAVVFLVTIHAYSNEKSEMEELSMVALSGCIWLQAFVITLETNSFTILQHAAIWGNLIAFYVINFIVSTLPWAGMYTIMFRVCKQPAYWLTMLAIIILGMGPITALKYFRYTYRSSAINILQQLERSQPNTHSNPNLEAPIKSMEKEVSPLSVTHPKSSKASVYEPLLCESPSTKRAAGVAAFDFLQANPSRLSFSYSRSKNN*

Protein Length: 288

Fln nts: TCGTGACCTTGGCTGCCACTCATTTTTTTCTTTTGTATCAGGTGTTTCTGGGACTAGTCTTTTCAATTCTTTCAGCTTGATGGCTTACAATGTCTTCTACACAAGTGTTCCAGTGTTGATGAGTGTGCTTGACAAAGATCTAAGTGAAAGAACAGTCATGCAGCATCCACAGATTCTTTTCTACTGTCAAGCAGGGAGATTATTAAATCCCAGTACATTTGCAGGTTGGTTTGGACGATCTCTGTTTCATGCAGCAGTTGTATTTCTAGTCACAATACATGCATACAGCAATGAAAAAAGTGAAATGGAGGAGTTATCCATGGTAGCACTATCAGGATGTATCTGGCTGCAGGCTTTTGTTATTACTTTAGAGACAAACTCCTTCACAATTTTACAGCATGCTGCAATCTGGGGCAACCTTATTGCATTTTATGTGATCAACTTTATTGTGAGCACTCTTCCATGGGCAGGAATGTACACGATAATGTTCCGTGTCTGCAAGCAACCGGCTTACTGGCTGACCATGCTGGCTATAATCATTCTTGGCATGGGCCCTATAACAGCTCTCAAGTACTTTCGTTATACATACCGATCAAGTGCTATTAACATATTGCAACAACTGGAACGTTCACAACCAAATACTCACTCTAACCCCAACCTGGAGGCACCTATAAAAAGCATGGAAAAGGAAGTGTCTCCTCTCTCTGTAACACATCCAAAAAGTAGCAAAGCATCAGTATATGAACCATTACTCTGTGAATCGCCATCAACAAAAAGAGCTGCAGGAGTAGCTGCTTTTGATTTCCTGCAAGCAAATCCATCGAGATTGTCATTTTCTTATTCAAGAAGTAAGAATAATTAA___TCGTTCTCTTGATGAACTTCATGGGACGCTTTTAGAGATTCCAAGTTCTTGAGATCTTGGTACAACTCAGGTCAACCCATAAATGTGGAATTAATGATCAAGCTTATAAATTTGTTATTGTTTACAGTCTAGGCAAGACAAGCTTACTTCTTGCTCTTTGGTCAAATGTGATTTACCATTAAGGTCTCGAAGTTAGCTTGTACCTTGGGAAAGACTATTTAAGGGCTATTCTAGCTATATTGCTTTATATAGTTTTTGTACCAAAATCATTTGCCAACAGAACAAGAAGCCATCTCATACTGCTGGAAGGTGGCTATATGGTCTAGGGTCTTTACAGGAAAATTGACAGTGAAATTTGTATATAATGGCCCACTGTGGTAATAGGTTTGAAAATCTATTGGCTATTTCGATCATTTCCTGGTTGAGCAAAGCAAAAGTTTTGGTACTACGTATATTTCCAGTGGGACATCGTGCCATGTCCAATATAATGTGGTAGATGTCAGCATTGTATGTCTCAACATGAATGAATTTAATACCAATATTTTTGACTCTTTGTATTCC

Fln Alignment:

sp_v1.1_unigene5696___TSLFNSFSLMAYNVFYTSVPVLMSVLDKDLSERTVMQHPQILFYCQAGRLLNPSTFAGWFGRSLFHAAVVFLVTIHAYSNEKSEMEELSMVALSGCIWLQAFVITLETNSFTILQHAAIWGNLIAFYVINFIVSTLPWAGMYTIMFRVCKQPAYWLTMLAIIILGMGPITALKYFRYTYRSSAINILQQLERSQPNTHSNPNLEAPIKSMEKEVSPLSVTHPKSSKASVYEPLLCESP-STKRAAGVAA-FDFLQANPSRLSFSYSRSKN
P98205______________TSLFNSVSLMAYNVFYTSVPVLVSVIDKDLSEASVMQHPQILFYCQAGRLLNPSTFAGWFGRSLFHAIIVFVITIHAYAYEKSEMEELGMVALSGCIWLQAFVVAQETNSFTVLQHLSIWGNLVGFYAINFLFSAIPSSGMYTIMFRLCSQPSYWITMFLIVGAGMGPIFALKYFRYTYRPSKINILQQAERMGGPILTLGNIETQPRTIEKDLSPISITQPK-NRSPVYEPLLSDSPNATRRSFGPGTPFEFFQSQ-SRLSSSSGYTRN

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
164		80		20	0.995493
340		85	14		0.993533
341	14	85			0.993533
343	14			85	0.993533
344			14	85	0.993533
345	85	14			0.993533
346	85	14			0.993533
348	14			85	0.993533
349	85		14		0.993533
350		42	57		1.0
353	14			85	0.993533
354		14		85	0.993533
355			14	85	0.993533
356	14	85			0.993533
358		85	14		0.993533
501			14	85	0.993533
502	14		85		0.993533
503		14		85	0.993533
506		85	14		0.993533
510	85		14		0.993533
513	14			85	0.993533
516	85	14			0.993533
790			14	85	0.993533
791	14		85		0.993533
794			16	83	0.994512
795	16		83		0.994512
796		16		83	0.994512
798	83	16			0.994512
800	16	83			0.994512
802			25	75	0.996473
805	25	75			0.996473
806	75	25			0.996473
808	25			75	0.996473
809		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain