SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5676

Length: 1068 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5676

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative zinc finger protein [Oryza sativa Japonica Group]	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	protein	-	-	68%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	68%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	68%
Blast2go	Zinc finger, RING-type, conserved site	IPR017907	-	68%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	68%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABG3

Fln msg: Distance to subject end: 152 aas, your sequence is shorter than subject: 281 - 475

Fln protein: MPAQKRSASPPADREDDDSEDSLSNSSDKDEYVVVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPQCRTHCASRRSLRDDPNYDALIAAIYPDLDKYEEEELALHEEDKWLNKQIQANIAQTYRRQSEALTRRRNTAKVTAAAIVRKAHGKFRNGQAGSKSGRKRQKRSVSTDVDEHTALKHSSSDEDSQEIRHQSEKIIPSSLPETSANTDNSNDDSDEINHGQAEVSRESTGGSHQIKGNIEVLVWGKGGARNQYAIWKCK

Protein Length: 282

Fln nts: ATGGGGGAATAGGAACTGAGCGTCAAAACGCATGCGCCGGCGAGAGGCTTCGTGAGCTTGGCTGTCACTCATCTCTCCCTTCTTCGGTTTCAATCCCTCGTTCTCGCCTCCACCACCTTGAATTATCTGGTTCAGTGAATTCCTCATATTCTCACAGCGTCTCAGAGGGGCTTTTCGTTCCCATTTCAGCGAAGAGGGCCATTGGGCCGAGGTTCGAAACACA_-_ATGCCAGCTCAAAAACGCTCGGCATCTCCTCCCGCGGACAGAGAAGACGACGATTCAGAAGACAGTCTTTCTAACAGCAGCGATAAAGACGAGTATGTTGTGGTCAAACTGTCTGATATTCGTAAGGAAGTGCAGTGTCCTATCTGCCTGGGAATTATCCGAAAGACAAGGACGGTGATGGAATGTCTCCACCGCTTTTGCAGAGAATGTATTGACAAGTCAATGCGTTTAGGGAACAATGAATGCCCTCAATGTCGTACACACTGTGCCAGCCGCAGATCGTTGAGAGATGATCCAAATTATGATGCTCTGATTGCAGCAATTTATCCCGACCTTGATAAGTATGAAGAAGAGGAGTTGGCTTTGCATGAAGAAGACAAATGGCTCAACAAGCAGATCCAGGCAAATATTGCACAAACATATCGGCGACAATCAGAAGCTCTTACCAGGCGCCGTAACACTGCTAAGGTCACTGCAGCAGCCATTGTTAGAAAGGCACATGGAAAATTTCGAAATGGTCAGGCTGGAAGCAAAAGTGGAAGGAAACGACAAAAGAGAAGTGTGTCTACTGATGTTGATGAACACACTGCACTGAAGCATTCTTCTTCTGATGAAGATTCTCAAGAAATTAGGCATCAAAGTGAAAAAATAATACCAAGTTCTTTACCTGAAACTTCAGCAAACACAGATAATAGCAATGATGACTCTGATGAAATAAATCATGGCCAAGCAGAAGTGAGCAGAGAAAGCACTGGTGGCTCTCATCAAATAAAGGGAAACATAGAAGTATTGGTTTGGGGTAAGGGTGGTGCACGGAACCAATATGCGATATGGAAGTGTAAGTG

Fln Alignment:

sp_v1.1_unigene5676___EYVVVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPQCRTHCASRRSLRDDPNYDALIAAIYPDLDKYXXXXXXXXXXDKWLNKQIQANIAQTYRRQSEALTRRRNTAKVTAAAIVRKAHGKFRNGQAGS------KSGRKRQKRSVSTDVDEHTALKHSSSDEDSQEIRH--QSEKIIPSSLPEXXXXXXXXXXXXXE-------------INHGQAEVSRESTGGSHQIKGNIEVLVWGKGGARN
D5ABG3______________EYVLVNLAAIREEMQCPICLGIIRKTRTVMECLHRFCRDCIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAAIYPDLDKYEAEEMALHEEEEDRNRQIQASIADTFRRQSEAMTRRRRTAKATAAAFVRKAHGKFCGVQGQSRVNNRVKNRSKRPRRSSATDGDEGEDLKQSFSDDEEPQPRRWTRRKRRAGSSLPETSADMDVGNGEEPDDINDEEAGENIQLVEYNQAEVSRESTDASPGNARNAEGLAWGKGGARS

SNPs (tot: 3)

Position	A %	C %	G %	Probability
277	66	33		0.997452
278	33	66		0.997452
772	75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain