SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5649

Length: 1197 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5649

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	glycosyl transferase family 1 protein [Arabidopsis thaliana]	-	-	56%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	62%
Blast2go	protein	-	-	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 1	IPR001296	-	0.0	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9ST31

Fln msg: your sequence is shorter than subject: 279 - 449

Fln protein: VVTLAVTQERVQRVIEEVKFFTKYTHHVATSDAVGEILRTVYMLPLRNVHIIVNGVDEGFFRPAKARGAAFRLKYGVPPDARLVLGMAGRLVKDKGHPLVFEVLKTLLQTGNYSDVFVLIAGDGPWGSRYRELAPNVKVVGPLSSAQLGDFYNALDIFVNPTLRAQGLDHTLMEAMLCGKPLLASHFSSITKSVVVSGDFGYTFSPRLESLRVALVRVIEDGKWILEKKGAACRSRAQELFTAVKMASAYERLFLCIARGNATGFDFCKYPLPLRIAH*

Protein Length: 280

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGAGCGTGTACAGAGAGTCATAGAGGAAGTAAAATTCTTTACCAAATACACTCACCATGTCGCCACCAGCGACGCGGTGGGGGAAATCTTGAGGACAGTCTACATGCTGCCGCTGCGAAATGTCCACATTATCGTTAATGGCGTCGACGAGGGTTTCTTCAGGCCAGCTAAAGCCCGCGGTGCTGCTTTCCGGTTAAAGTACGGCGTGCCACCGGACGCCCGGCTGGTTTTGGGCATGGCCGGCCGGCTTGTGAAGGATAAGGGCCACCCGCTCGTCTTTGAGGTCCTTAAAACCCTCCTGCAGACCGGAAATTATTCTGATGTTTTCGTCTTGATTGCTGGCGATGGACCCTGGGGTTCCCGTTACCGAGAACTGGCGCCGAATGTGAAAGTCGTAGGGCCACTGAGCTCAGCTCAACTGGGGGATTTCTATAATGCCCTGGATATCTTTGTAAACCCGACGCTGAGAGCCCAGGGTCTCGATCACACGCTCATGGAGGCCATGCTGTGCGGTAAGCCGCTACTGGCGTCGCATTTTAGCAGCATTACGAAGAGCGTGGTGGTGAGCGGGGATTTCGGGTACACATTCAGTCCCAGGCTCGAATCCCTCCGCGTTGCGTTGGTGAGAGTTATCGAGGATGGCAAGTGGATTCTGGAGAAGAAGGGAGCAGCGTGCAGGAGCAGGGCGCAGGAGCTGTTCACTGCGGTCAAAATGGCCTCCGCGTATGAAAGGCTTTTCCTGTGTATTGCCAGGGGAAATGCCACCGGATTCGATTTCTGCAAATACCCTCTTCCACTTCGTATTGCTCACTAA___TAGGTATTCATCCATTGATCCATGCTACCTCTCTTTGCCCATGAAATTAGCATACAAATTTTGTAGCTATCTTTCTCTTTGATGTGTACCATTATTTCACCCAGTGCTTCCAATTCAGAGCATTCAAACCAATGAGTACAAGGGGAGTGATTTGCGATCATATGCAATTAAATTGTAAAGAGAGATTCAATCTGTACCTTGAGTTCTTCTTCACCTGCAATCTCCTTTGCATCCGAAGGAGGTGCAGCTTCTTCAATCTTGTTGGTCTGAGTTTTTATGCCAAGTTAATCCGTGACATTCATTGCAGCAATCTATGCCAGCCAAGTTGAATGGCAGTAGCCTAGACTATTTTGAGGCAC

Fln Alignment:

sp_v1.1_unigene5649___RVQRVIEEVKFFTKYTHHVATSDAVGEILRTVYMLPLRNVHIIVNGVDEGFFRPAKARGAAFRLKYGVPPDARLVLGMAGRLVKDKGHPLVFEVLKTLLQTGNYSDVFVLIAGDGPWGSRYRELAPNVKVVGPLSSAQLGDFYNALDIFVNPTLRAQGLDHTLMEAMLCGKPLLASHFSSITKSVVVSGDFGYTFSPRLESLRVALVRVIEDGKWILEKKGAACRSRAQELFTAVKMASAYERLFLCIARGNATGFDFCKYPLPL
A9ST31______________RLVRVADEVRFFPSYRHHVATSDYVGDVLRTIYEIPLENVHIILNGVNEQDFRPNPSAGAAFRAKYGVPSNASLVLGAAGRLVRDKGHPILFEAFSEILKT--HKDVYLLVAGSGPWGSRYEELGPNVKTIGPLIPSQLSEFYNAVDIFVNPTLRAQGLDITLLEAMQCGKPLLATHFSSIVWSVITDKKIGYTFSPNVQSLVVALEKVIKDGKDKLREKGQTCLAYASKMFTAKKMASAYERLFLCI-----TNEEYCQYPSPI

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
412			83	16	0.994512
413		16		83	0.994512
415	83	16			0.994512
420		83	16		0.994512
426		16	83		0.994512
544	90		10		0.90298
549			87	12	0.992554
550		87		12	0.992554
551			12	87	0.992554
552	87		12		0.992554
556			87	12	0.992554
558	12		87		0.992554
561	12		87		0.992554
574	77		22		0.999999
580	77			22	0.999999
584		22	77		0.999999
586			77	22	0.999999
590		22		77	0.999999
591			77	22	0.999999
594		22	77		0.999999
598			77	22	0.999999
599		22	77		0.999999
600	22		77		0.999999
690	90			10	0.90298
692	90		10		0.90298
693	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain