SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5634

Length: 1109 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5634

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Class III peroxidase n=1 Tax=Gossypium hirsutum RepID=Q8RVP5_GOSHI	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	peroxidase 25	-	-	73%

Source	InterPros	Term	Type	Identity
Blast2go	Plant peroxidase	IPR000823	-	73%
Blast2go	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	73%
Blast2go	Haem peroxidase	IPR010255	-	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NST7

Fln msg:

Fln protein: MGTSRFGIIELGVLISIGLVLGSNLSEGNLQTGFYSSSCPTAESVVRSTVQQSVQADPTLAAGLLRLHYHDCFVQGCDGSILITGPNAEQTAPGHSGLRGFDVIENAKKQLERICPRVVSCADIVALAARDAVALSNGPNYDVPTGRRDGMRSSAGDASNMPDPTDSVDVLKRKFAAKGLSASDLVVLNGAHTIGTTACFFIEDRLYNFAGAGDADPSMNPEYLTELRSICPQGGDANTKVALDRGSEFQFDDEFLENVREGNGALQSDASMYQDSSTRGYIDSYFGLLGGLLGPSFESDFADAIVKMGQVGVKTGSNGKIRTVCSVL*

Protein Length: 330

Fln nts: GTAATCAGAAGGGCAGAGCTTCGGCCGATGCGTGGTATTTAACTAGAGAGTGGGTTTATCGGAAGATATTATAGTTTGTTTGATATAAGGAAGCGCA_-_ATGGGAACAAGTAGGTTTGGGATTATAGAGCTTGGGGTCCTGATTAGTATTGGCTTGGTCTTGGGTTCGAATCTCAGCGAGGGTAACTTACAAACGGGATTTTACTCTTCGAGTTGTCCCACAGCAGAGTCCGTGGTGCGCTCGACCGTGCAACAGAGCGTCCAAGCCGATCCAACGCTTGCAGCAGGGCTTCTGCGTTTACACTATCATGACTGTTTCGTCCAGGGTTGCGATGGATCAATCCTTATTACCGGGCCCAACGCTGAACAGACGGCGCCAGGCCATTCCGGATTGCGGGGCTTTGATGTCATAGAAAATGCCAAGAAACAGCTCGAAAGAATCTGTCCCAGAGTCGTTTCCTGTGCTGACATCGTTGCATTGGCAGCCAGAGATGCCGTGGCACTGAGTAATGGACCCAATTATGATGTACCTACTGGACGAAGAGATGGAATGAGATCCTCTGCAGGGGACGCTTCGAACATGCCAGACCCTACGGATTCAGTCGATGTACTCAAACGCAAATTTGCTGCAAAGGGTTTATCTGCATCAGATCTTGTTGTTCTCAATGGAGCACACACGATCGGAACAACTGCATGTTTCTTCATCGAGGACCGTCTGTACAACTTCGCAGGCGCTGGCGACGCAGACCCCTCTATGAATCCCGAATACTTGACGGAACTGAGATCAATTTGCCCCCAGGGCGGCGATGCTAATACGAAGGTGGCTCTGGACAGGGGTTCCGAATTCCAATTTGACGACGAATTCCTAGAAAACGTGAGGGAGGGCAACGGAGCGCTACAGTCTGATGCGAGCATGTACCAAGACAGTTCCACCCGCGGATACATCGACTCCTATTTTGGGCTCCTCGGTGGCCTTCTGGGGCCTTCATTTGAATCCGACTTTGCAGATGCAATTGTAAAGATGGGGCAGGTCGGCGTCAAAACCGGTTCCAATGGAAAGATTCGTACCGTCTGTTCAGTCCTATAA___GTAGGAGCTGCAGTTGATAATTGCG

Fln Alignment:

sp_v1.1_unigene5634___QTGFYSSSCPTAEXXXXXXXXXXXXADPTLAAGLLRLHYHDCFVQGCDGSILITGPNAEQTAPGHSGLRGFDVIENAKKQLERICPRVVSCADIVALAARDAVALSNGPNYDVPTGRRDGMRSSAGDASNMPDPTDSVDVLKRKFAAKGLSASDLVVLNGAHTIGTTACFFIEDRLYNFAGAGDADPSMNPEYLTELRSICPQGGDANTKVALDRGSEFQFDDEFLENVREGNGALQSDASMYQDSSTRGYIDSYFXXXXXXXXPSFESDFADAIVKMGQVGVKTGSNGKIRTVCS
A9NST7______________KVGFYSASCPKAESIVRSTVQTYFNADHTIAAGLLRLSFHDCFVQGCDGSILITGPSAERNSLTNLGLRGFEVIEDVKEQLESVCPVVVSCADILALAARDVVVLSNGPTWSVPTGRRDGLVSSSSDTANLPTPADSITVQKKKFADKGLTTEDLVTLVGAHTVGQSDCQIFRYRLYNFTATGNADPTITSSYLTQLQSLCPASGDGSKRVALDKGSQMYFDVSFFKNVRDGNAVLESDQRLWGDESTKAVVQNYAGSVRGILGFRFDFDFTKAMIKMSNIGVKTGTDGEIRKVCS

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
795		50	50		1.0
796		50		50	1.0
802	50		50		1.0
803			50	50	1.0
805	50		50		1.0
807		50	50		1.0
808			50	50	1.0
812	50	50			1.0
816		50		50	1.0
818	50	50			1.0
828			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
795		50	50		1.0
796		50		50	1.0
802	50		50		1.0
803			50	50	1.0
805	50		50		1.0
807		50	50		1.0
808			50	50	1.0
812	50	50			1.0
816		50		50	1.0
818	50	50			1.0
828			50	50	1.0

Position	A %	C %	G %	T %	Probability
795		50	50		1.0
796		50		50	1.0
802	50		50		1.0
803			50	50	1.0
805	50		50		1.0
807		50	50		1.0
808			50	50	1.0
812	50	50			1.0
816		50		50	1.0
818	50	50			1.0
828			50	50	1.0

Position	A %	C %	G %	T %	Probability
795		50	50		1.0
796		50		50	1.0
802	50		50		1.0
803			50	50	1.0
805	50		50		1.0
807		50	50		1.0
808			50	50	1.0
812	50	50			1.0
816		50		50	1.0
818	50	50			1.0
828			50	50	1.0