SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5621

Length: 389 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene5621
CATGCTTCAAAAGCTCGCCCATTACAGCAACGTTTCCAGCCACTAGAGGGATTTGGAGAAATGACCAAAAAGTGGAGGAAGTTTTATAAAGTTAGAGCCCAGGAGAAGCCTGCCAAATTGGTGACATTTATCGGAAAAGGTGGAGCAGGCAAAACAGCCTGTGCCCTGATTGCTGCTCAGTACTATTCAAGGACTGGTTTAAGAACGTGCCTTGTTATACAGTCTCAGGATCCAACTGCAGAATATTTGCTTGGTCAGAAGATTGGAACTACTCCTACTCCTATAGGAAATGGGACCCTACAAGCTGTTCGGCTAGAATCCACTAAGATGCTTCTTGAACCCCTTCATCGATTAAAGAAGGCAGATGCTAGGCTTAATTTAAGCCAAGG

Ace file of the UniGene sp_v1.1_unigene5621

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	anion-transporting ATPase; K01551 arsenite-transporting ATPase [EC:3.6.3.16]	-	-	6.0e-05	34%
FL-Next	sp=Uncharacterized protein At1g26090, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	57%
Blast2go	atp binding protein	-	-	1.81191e-23	74%

Source	ECs	Term	Type	e value	Identity
AutoFact	Arsenite-transporting ATPase.	EC:3.6.3.16	-	6.0e-05	34%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastoglobule	GO:0010287	Cellular Component	1.81191e-23	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6DYE4

Fln msg: Distance to subject end: 306 aas, your sequence is shorter than subject: 129 - 455

Fln protein: HASKARPLQQRFQPLEGFGEMTKKWRKFYKVRAQEKPAKLVTFIGKGGAGKTACALIAAQYYSRTGLRTCLVIQSQDPTAEYLLGQKIGTTPTPIGNGTLQAVRLESTKMLLEPLHRLKKADARLNLSQ

Protein Length: 130

Fln nts: CATGCTTCAAAAGCTCGCCCATTACAGCAACGTTTCCAGCCACTAGAGGGATTTGGAGAAATGACCAAAAAGTGGAGGAAGTTTTATAAAGTTAGAGCCCAGGAGAAGCCTGCCAAATTGGTGACATTTATCGGAAAAGGTGGAGCAGGCAAAACAGCCTGTGCCCTGATTGCTGCTCAGTACTATTCAAGGACTGGTTTAAGAACGTGCCTTGTTATACAGTCTCAGGATCCAACTGCAGAATATTTGCTTGGTCAGAAGATTGGAACTACTCCTACTCCTATAGGAAATGGGACCCTACAAGCTGTTCGGCTAGAATCCACTAAGATGCTTCTTGAACCCCTTCATCGATTAAAGAAGGCAGATGCTAGGCTTAATTTAAGCCAAGG

Fln Alignment:

sp_v1.1_unigene5621___AQEKPAKLVTFIGKGGAGKTACALIAAQYYSRTGLRTCLVIQSQDPTAEYLLGQKXXXXXXXXXXXXLQAVRLESTKMLLEPLHRLKKADARLNLSQ
Q6DYE4______________SSQKLTKFVTFLGKGGSGKTTAAVFAAQHYALAGLSTCLVIHNQDPSAEFLLGSK-IGTSPTLINDNLSVIRLETTKMLLEPLKQLKQADARLNMTQ

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
89	66		33		0.997452
90	66		33		0.997452
91	66		33		0.997452
280		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain