SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5605

Length: 1623 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene5605 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoinositide 5-phosphatase, putative	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	phosphoinositide phosphatase family protein	-	-	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Synaptojanin, N-terminal	IPR002013	-	0.0	63%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL30

Fln msg: STOP codon was not found. Distance to subject end: 168 aas, your sequence is shorter than subject: 541 - 573

Fln protein: SMIKARVANDVETEQIIFEDEPHGCPRKITSVVQNRGSIPLYWSQEASRLNLRPDIILHKKDPTYQATRLHFENLVKRYGNPIIVWSLIKKYEKKPREATLGAEFANAIQFINKNLPEENHLKYIHWDFHRAFRSKSLNVLADLEKMADEALCLTGFYYSGITSDLESEPEKAIAAQKVGVAEDFPMPESDKPCTTIEDGLSMHKRNANILRTLDPSGLICENKPLFQKGVLRTNCIDCLDRTNVAQYAYGLAALGHQLLALGLIDDPKVDPDSSLGEALMGLYENMGDTLAFQYGGSAAHNKVFSERRGRWKATTHSQEFFRTLQRYYTNAYLDAEKQDAINVFLGHFQPQQGKPALWELASDQHCNIGHRVADFVNGDPGSYFKRSLSDGNMLMPNAAGVSTPVTSQSLQPRLPKTERSLLAEGTILENVDDSVNQTSYSRFRQSTTRRQLFNDCRRIKSPLYSGNVTESGQQEAVLISTNSQFNDFDWLASSGNSCEEDSGERCSMTTAFDINSCRNYSANDTVEEYDQTSEEQWNGG

Protein Length: 542

Fln nts: TCAATGATAAAGGCTAGAGTTGCAAATGATGTTGAAACAGAACAGATAATATTTGAGGATGAGCCTCATGGGTGTCCAAGAAAAATAACCTCTGTAGTACAAAATCGAGGCTCAATACCCCTTTATTGGTCACAAGAAGCATCCCGCTTGAACCTCAGGCCAGATATCATTTTGCACAAAAAAGATCCAACCTATCAGGCAACGAGATTACACTTCGAAAATCTTGTTAAGAGATATGGAAATCCAATCATTGTTTGGAGTCTCATCAAGAAGTATGAGAAGAAACCCCGAGAAGCCACTTTAGGTGCTGAGTTTGCCAATGCAATACAATTCATTAACAAAAATCTGCCTGAAGAAAATCACCTTAAGTATATTCACTGGGATTTTCACAGGGCTTTCCGAAGCAAGTCTTTAAATGTTTTGGCAGACTTGGAAAAGATGGCAGATGAAGCATTGTGCCTTACAGGGTTTTATTATAGTGGAATAACATCAGATCTTGAATCTGAGCCAGAGAAGGCAATAGCTGCACAGAAAGTTGGTGTTGCAGAAGATTTCCCTATGCCAGAGAGCGATAAACCTTGTACAACGATTGAGGATGGTCTTTCCATGCACAAAAGGAATGCAAACATACTTAGAACGTTGGACCCATCAGGACTTATTTGTGAGAATAAGCCATTGTTCCAAAAAGGAGTTCTGCGAACAAATTGTATTGATTGTCTTGACCGTACAAATGTTGCACAGTATGCATATGGATTGGCTGCATTAGGTCACCAACTTCTTGCACTAGGTTTGATAGATGATCCAAAAGTTGATCCTGACAGTAGCTTAGGTGAAGCTTTAATGGGACTGTATGAAAATATGGGTGATACACTTGCATTTCAGTACGGTGGTTCTGCTGCTCATAACAAGGTTTTCTCGGAAAGGCGTGGTCGCTGGAAAGCAACAACTCATTCTCAAGAGTTTTTCAGAACACTTCAACGCTACTATACAAATGCTTATCTAGATGCAGAGAAGCAGGATGCAATAAATGTGTTTCTGGGGCACTTTCAACCACAGCAAGGAAAACCAGCTCTTTGGGAGCTTGCCTCTGACCAGCACTGTAATATTGGACATCGTGTTGCTGACTTTGTTAACGGAGATCCAGGATCATATTTCAAGAGGTCTCTTTCTGATGGAAACATGCTAATGCCAAATGCTGCTGGTGTTTCAACACCAGTGACTAGCCAAAGCTTACAACCAAGGTTGCCAAAGACTGAAAGATCTCTACTAGCAGAGGGAACCATTCTAGAAAATGTAGACGACTCTGTGAATCAAACATCTTATTCACGGTTTAGGCAATCCACAACTCGCAGGCAATTGTTCAATGACTGCAGAAGAATCAAGTCCCCACTTTATAGTGGCAATGTTACTGAGAGTGGCCAACAGGAAGCAGTGCTTATCTCAACAAATTCACAGTTTAATGATTTTGACTGGCTTGCTTCTTCTGGCAATTCATGTGAAGAAGATTCAGGTGAAAGATGTTCAATGACCACTGCATTTGATATAAATTCATGTCGCAATTATAGTGCGAACGATACGGTTGAAGAATATGACCAGACATCAGAGGAACAATGGAACGGAGGA

Fln Alignment:

sp_v1.1_unigene5605___IKARVANDVETEQIIFEDEPHGCPRKITSVVQNRGSIPLYWSQEASRLNLRPDIILHKKDPTYQATRLHFENLVKRYGNPIIVWSLIKKYEKKPREATLGAEFANAIQFINKNLPEENHLKYIHWDFHRAFRSKSLNVLADLEKMADEALCLTGFYYSGITSDLESE
B8LL30______________LEGHVANFIETEQLLEVDG------FITSYLQVRGSIPVLWEQIVD-LTYKPKLNIINTDETPKVVERHFRDLVQRYG-PVLAVDLA---DRKGNEGPLSLAYADAVQSL-------KHIRYISFDFHRICGLVHFQRLQLLYEQLAEDLKKQGYFLTNPAGEMIEE

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1022			33	66	1.0
1023			66	33	1.0
1026	66	33			1.0
1033	33			66	1.0
1034		66	33		1.0
1035		66	33		1.0
1039	66		33		1.0
1040	33			66	1.0
1196	12	87			0.992554
1461	20			80	0.995493
1466	80		20		0.995493
1467	20			80	0.995493
1470	20		80		0.995493
1475	20		80		0.995493
1483	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain