SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5592

Length: 2010 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene5592
CGTCGTGACCTTGGCTGTCACTCATTTCCCCCAACTTCAGTGCCTTCTTTTGCACAGATGAATAATGTGTCGAACCCTAGTCAAAACCCCACGCACACGAGGTCGATCTCGCAGCCCGCATTCTTGCAGGGGAATCCCTTTGGGGAGTCCAACATCAATTTGCCTCCCTTGACCACGGCGTTTTCTTTAAAGCGAGAAACGGCAGCGTCGCCTTCGCTGTCAGACCCGGACGTGACCATGGACGAGCATCCCATTCCTTCCCCCCGGCCCCCGGTGTCCCCCTTCTCTGCCGATTCTCATTCTCGCCCTGACGCGTCTCGAACTGGCGACGTGCTGCCACCGCGAAAGGGCGGGCACCGGCGGGCGCACAGTGAAATCCCGCGGCAGGTATCGTGGGACAGGGTCGGAAAAGGCGTGAAGAAGGAAGCTGAGTGGGATCGAGATGGCGACCTAAACATGGAAGTGGGGGATGGCGAGGATCTGTTCTCCATGTACATTGATCTGGATAAGCTCAACACTCTTAATACCACCTCCTCTGCTAACCCCGCGGACATTGGGGAAGGTAGTGGGGAAAGCGGGAGAAAGACGTTAAATGCCGATGACGATAACGAGGATGACAAGGCAGGGCAGGATGACAGCGGCGGAAACAGTGTGAAAGAAAAGGATATTGACAGTGGCGACGACGATGCAGAGAGCGAGAGCAATGAGAAGAAGGATGGTCACAAACGAAGCTTCCCTGGGGGCGGCGACAGCACTGGGAGATCACATGCTGCTGCTTCTCATCATCATCCTCATCATGTCCGGAGTGTTTCAATGGACAGTGTTCTCAGTAGCTTCCAAAACAGTGAGAATCCGAATCAGAAACCGTCCCCCTCTCCTACTGGCCGTAACATCAAACATTTTCACAGTAATTCCATGGATGGGAGCATGAATTTCAAACTTGAATTTGGCAATGGCGAATTCAGTGGACCTGAGCTCAATAAAATAATGTCCAACGAAAAACTAGCAGAGATTGCTATGACCGATCCAAAACGTGCAAAGAGAATATTGGCCAATCGGCAGTCGGCTGCACGGTCTAAGGAAAGAAAGATGCGCTACATCTCTGAGCTGGAACGTAAGGTGCAAACGTTGCAAACTGAGGCTACCACATTGTCCGCACAACTTACCCTTTTGCAGAGAGATTCGATGGGGCTCACTAATGAAAATAATGAGCTCAAGCTTCGGCTGCAAGCCATGGACCAGCAAGCCCAACTTCGAGATGCATTAAATGAGGCTCTCAGCGAGGAGGTTCAACGACTAAAATTAGCGACAGGACAGTCAATCTCCATGAATTCACATATGTTTCAGCTTCAGCAGCAGGGCCCCCATGTTGCAGTTCATCAATTACAGCAACAGCAGCAGCAACAACATCAACAACAAGTCACAAATTCACAGCAGTCTCCTGGCCAGCAAACAAACCAAAATGAAGTCCTACAGAACACATATGGTGCTTTTCCGGGTTCACTAAGCCCTTTTCTCAAATCGGATGGCTCAAACATTCCCGCTAGCCAAGGGAGCAATTGTTCCTATTAAACTAGATTCTTTGTTTTTAAATTTATCCTCTTTCCTTTCCTTACTTTTTATGTAATGTATAGTGCAGCCACTTGGGGAGGGAAGGATTGTACATACATTATCCGATGTCATATTTATGTGTTGAACTAACTAGGGATGTTGATAGCTTTGGACAGCGGTCTTTTTAGCATCTTCTGGCTCTAAATTTTATTTGAAGGCGTACATAATTTGAGCCAACTTCATTCTGTTATTGGGCATAATCTGAAGATGTGCATCTTGTATGATGTTCTTAGATCATTCTAGTTCGTATGCAACCGTCGGTTCTTATAAAGGTTCCTGTAATATAGTAGTCTTTTCTGTAGGGAAATAATGACTACGTTTTGATTTATTTCATTGTGACTATGAAGAAAAATGCTAGATATCTGTTGACTGGACATCTCTAGTGTACATGGTGGAGTG

Ace file of the UniGene sp_v1.1_unigene5592

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	bZIP protein	-	-	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Basic-leucine zipper domain	IPR004827	-	0.0	59%
Blast2go	bZIP transcription factor, bZIP-1	IPR011616	-	0.0	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ18

Fln msg: your sequence is shorter than subject: 524 - 585

Fln protein: RRDLGCHSFPPTSVPSFAQMNNVSNPSQNPTHTRSISQPAFLQGNPFGESNINLPPLTTAFSLKRETAASPSLSDPDVTMDEHPIPSPRPPVSPFSADSHSRPDASRTGDVLPPRKGGHRRAHSEIPRQVSWDRVGKGVKKEAEWDRDGDLNMEVGDGEDLFSMYIDLDKLNTLNTTSSANPADIGEGSGESGRKTLNADDDNEDDKAGQDDSGGNSVKEKDIDSGDDDAESESNEKKDGHKRSFPGGGDSTGRSHAAASHHHPHHVRSVSMDSVLSSFQNSENPNQKPSPSPTGRNIKHFHSNSMDGSMNFKLEFGNGEFSGPELNKIMSNEKLAEIAMTDPKRAKRILANRQSAARSKERKMRYISELERKVQTLQTEATTLSAQLTLLQRDSMGLTNENNELKLRLQAMDQQAQLRDALNEALSEEVQRLKLATGQSISMNSHMFQLQQQGPHVAVHQLQQQQQQQHQQQVTNSQQSPGQQTNQNEVLQNTYGAFPGSLSPFLKSDGSNIPASQGSNCSY*

Protein Length: 525

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCCCCCAACTTCAGTGCCTTCTTTTGCACAGATGAATAATGTGTCGAACCCTAGTCAAAACCCCACGCACACGAGGTCGATCTCGCAGCCCGCATTCTTGCAGGGGAATCCCTTTGGGGAGTCCAACATCAATTTGCCTCCCTTGACCACGGCGTTTTCTTTAAAGCGAGAAACGGCAGCGTCGCCTTCGCTGTCAGACCCGGACGTGACCATGGACGAGCATCCCATTCCTTCCCCCCGGCCCCCGGTGTCCCCCTTCTCTGCCGATTCTCATTCTCGCCCTGACGCGTCTCGAACTGGCGACGTGCTGCCACCGCGAAAGGGCGGGCACCGGCGGGCGCACAGTGAAATCCCGCGGCAGGTATCGTGGGACAGGGTCGGAAAAGGCGTGAAGAAGGAAGCTGAGTGGGATCGAGATGGCGACCTAAACATGGAAGTGGGGGATGGCGAGGATCTGTTCTCCATGTACATTGATCTGGATAAGCTCAACACTCTTAATACCACCTCCTCTGCTAACCCCGCGGACATTGGGGAAGGTAGTGGGGAAAGCGGGAGAAAGACGTTAAATGCCGATGACGATAACGAGGATGACAAGGCAGGGCAGGATGACAGCGGCGGAAACAGTGTGAAAGAAAAGGATATTGACAGTGGCGACGACGATGCAGAGAGCGAGAGCAATGAGAAGAAGGATGGTCACAAACGAAGCTTCCCTGGGGGCGGCGACAGCACTGGGAGATCACATGCTGCTGCTTCTCATCATCATCCTCATCATGTCCGGAGTGTTTCAATGGACAGTGTTCTCAGTAGCTTCCAAAACAGTGAGAATCCGAATCAGAAACCGTCCCCCTCTCCTACTGGCCGTAACATCAAACATTTTCACAGTAATTCCATGGATGGGAGCATGAATTTCAAACTTGAATTTGGCAATGGCGAATTCAGTGGACCTGAGCTCAATAAAATAATGTCCAACGAAAAACTAGCAGAGATTGCTATGACCGATCCAAAACGTGCAAAGAGAATATTGGCCAATCGGCAGTCGGCTGCACGGTCTAAGGAAAGAAAGATGCGCTACATCTCTGAGCTGGAACGTAAGGTGCAAACGTTGCAAACTGAGGCTACCACATTGTCCGCACAACTTACCCTTTTGCAGAGAGATTCGATGGGGCTCACTAATGAAAATAATGAGCTCAAGCTTCGGCTGCAAGCCATGGACCAGCAAGCCCAACTTCGAGATGCATTAAATGAGGCTCTCAGCGAGGAGGTTCAACGACTAAAATTAGCGACAGGACAGTCAATCTCCATGAATTCACATATGTTTCAGCTTCAGCAGCAGGGCCCCCATGTTGCAGTTCATCAATTACAGCAACAGCAGCAGCAACAACATCAACAACAAGTCACAAATTCACAGCAGTCTCCTGGCCAGCAAACAAACCAAAATGAAGTCCTACAGAACACATATGGTGCTTTTCCGGGTTCACTAAGCCCTTTTCTCAAATCGGATGGCTCAAACATTCCCGCTAGCCAAGGGAGCAATTGTTCCTATTAA___ACTAGATTCTTTGTTTTTAAATTTATCCTCTTTCCTTTCCTTACTTTTTATGTAATGTATAGTGCAGCCACTTGGGGAGGGAAGGATTGTACATACATTATCCGATGTCATATTTATGTGTTGAACTAACTAGGGATGTTGATAGCTTTGGACAGCGGTCTTTTTAGCATCTTCTGGCTCTAAATTTTATTTGAAGGCGTACATAATTTGAGCCAACTTCATTCTGTTATTGGGCATAATCTGAAGATGTGCATCTTGTATGATGTTCTTAGATCATTCTAGTTCGTATGCAACCGTCGGTTCTTATAAAGGTTCCTGTAATATAGTAGTCTTTTCTGTAGGGAAATAATGACTACGTTTTGATTTATTTCATTGTGACTATGAAGAAAAATGCTAGATATCTGTTGACTGGACATCTCTAGTGTACATGGTGGAGTG

Fln Alignment:

sp_v1.1_unigene5592___FPPTSVPSFAQMNNVSNPSQNPTHTRSISQPAFLQGNPFGESNINLPPLT-TAFSLKRETAASPSLSDPDVTMDEHXXXXXXXXXXXXXADSHSRPDASRTGDVLPPRKGGHRRAHSEIPRQVSWDRVGKGVKKEAEWDRDGDLNMEVGDGEDLFSMYIDLDKLNTLNTTSSANPADIGEGSGESGRKTLNADDDNEDDKAGQDDSGGNSVKEKDIDSGDDDAESESNEKKDGHKRSFPGGGDSTGXXXXXXXXXXXXXXXXXXMDSVLSSFQNSENPNQKPSPSPTGRNIKHFHSNSMDGSMNFKLEFGNGEFSGPELNKIMSNEKLAEIAMTDPKRAKRILANRQSAARSKERKMRYISELERKVXXXXXXXXXXXXXXXXXXRDSMGLTNENNELKLRLQAMDQQAQLRDALNEALSEEVQRLKLATGQSISMNSHMFQLQQQGPHVAVH--XXXXXXXXXXXXXXXXXXXXXXXXTNQNEVLQNTYGAFPGSLSPFLKSDGSNIPASQGSNCSY
B8LQ18______________FPPTSVPSFAQMNNVSNPSQNPTHSRSISQPAFLQGNPFGESNSNLPPLTPTTFSLKRETAASPSLSDPDVTMDEHPIPSPRPPVSPFSADSHSRPDASRTGDVLPPRKGGHRRAHSEIPRQVSWDKVGKGVKKEAEWDRDGDLNMEVGDGEDLFSMYIDLDKLNTLNTTSSANPADIGEGSGESGRKTLNADDDNEDDKAGPDDSGGNSVKEKDIDSGDDDAESESNEKKDGHKRSFPGGLDSTGRSHAAASHHHPHHVRSVSMDSVLSSFQNSENPNQKPAPSPTGRNIKHFHSNSMDGSINFKLEFGNGEFSGPELNKIMSNEKLAEIAMTDPKRAKRILANRQSAARSKERKMRYISELERKVQTLQTEATTLSAQLTLLQRDSMGLTNENNELKLRLQAMDQQAQLRDALNEALSEEVQRLKLATGQSISINSHLFQLQQQGPHVAVHQLQQQQQHQQQHQQQVTNSQQSPGHQTNQNEVLQNTYGAFPGSLGSFLKSDGSNIPASQGSNCSF

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
555	83		16		0.994512
612	83			16	0.994512
613		83	16		0.994512
615	83		16		0.994512
743		14	85		0.993533
920	77		22		0.999999
925		22		77	0.999999
926		22	77		0.999999
927			77	22	0.999999
928			77	22	0.999999
929	77		22		0.999999
936	77	22			0.999999
938		22		77	0.999999
940		22		77	0.999999
941	22	77			0.999999
1092	85	14			0.993533
1160	11	88			0.923564
1161			88	11	0.923564
1162		88	11		0.923564
1163	88		11		0.923564
1164		88	11		0.923564
1203	90	10			0.90298
1204	90		10		0.90298
1208	90	10			0.90298
1209	90	10			0.90298
1210	90			10	0.90298
1212	90		10		0.90298
1213	90	10			0.90298
1216	90	10			0.90298
1217	10		90		0.90298
1439	11		88		0.923564
1440		88		11	0.923564
1441	88		11		0.923564
1443			11	88	0.923564
1559		10	90		0.90298
1560	88			11	0.923564
1564	90	10			0.90298
1566		10		90	0.90298
1567	10		90		0.90298
1736		13		86	1.0
1941		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain