SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5576

Length: 1532 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5576

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	O-methyltransferase n=3 Tax=Pinus RepID=O24287_PINRA	-	-	46%
FL-Next	sp=Caffeic acid 3-O-methyltransferase; Coffea canephora (Robusta coffee).	-	-	39%
Blast2go	caffeic acid o-methyltransferase	-	-	61%

Source	InterPros	Term	Type	Identity
Blast2go	O-methyltransferase, family 2	IPR001077	-	61%
Blast2go	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	61%
Blast2go	Plant methyltransferase dimerisation	IPR012967	-	61%
Blast2go	O-methyltransferase, COMT, eukaryota	IPR016461	-	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8LL87

Fln msg:

Fln protein: MDRKEYNVQAPPPPPMDLIFSFAPALALKSAVLLKIPDIIATAGPDPDSSLSLRQIAARLPTQTPHLDYLSRILRYLSTLGIFIESQTSSDPLDFHYGLTHTAKCYFLSDQNENKPCSMVPLLLMQTHEKLMAPWHHFHECVLQGEGCEGAFTKAHGKDVWAYCMDDPNLNTVINNAMASFTNIVMIPFLSVYEGFKSGEKLRVVDVGGGKGAAIAQIVKAYPHINGINFDLPHVIATAPPISDVQHVGGDMFHSVPSGDVIFMKQILHDWDDERCAKILENCHRALPENGRIVVVEIVVSQHDQNRSQHVEMVASLTMLAHTNGRERNEQQWRRLFESSGFSTLKMVGLLGNTHFSVLEATKAKIH*

Protein Length: 369

Fln nts: ATGGGGACGAACACCAACTTTTTTTAGAGGTTCGATGCATTATCCTTTCCCCTCTCTGATTCGATTTGTATCTCGAACCTGTTTTGATTTGGGAGTCCGATACG_-_ATGGACAGAAAAGAGTATAACGTGCAGGCACCTCCCCCTCCTCCTATGGATTTAATCTTTTCTTTCGCTCCTGCCCTCGCTCTCAAATCTGCTGTGCTCCTCAAAATTCCAGATATCATCGCAACTGCAGGCCCTGATCCCGATTCCTCTCTCTCGCTTCGCCAAATAGCTGCGCGCCTCCCTACTCAAACTCCCCATCTCGATTATCTTTCCCGCATTCTCAGATACCTCTCCACCCTCGGCATTTTCATTGAATCTCAAACCTCTTCTGACCCTCTTGATTTTCATTATGGGCTTACACACACTGCCAAATGTTACTTTCTCAGCGATCAGAATGAGAATAAGCCCTGCAGTATGGTGCCTCTCCTTCTGATGCAAACCCACGAGAAACTAATGGCACCATGGCACCATTTTCATGAATGTGTGCTCCAAGGCGAAGGGTGCGAGGGAGCTTTCACGAAGGCCCATGGGAAAGATGTATGGGCTTATTGCATGGACGACCCAAATCTGAACACCGTCATTAATAATGCCATGGCCTCATTTACCAATATTGTGATGATACCATTTCTAAGTGTTTACGAGGGTTTTAAGAGTGGAGAGAAGCTGAGGGTTGTGGATGTGGGTGGTGGAAAAGGAGCGGCCATAGCTCAGATCGTGAAGGCTTATCCCCACATCAATGGGATTAACTTTGATCTTCCTCATGTCATTGCAACTGCTCCACCTATTTCAGATGTACAACACGTGGGTGGTGACATGTTTCACAGCGTACCTTCTGGAGATGTCATCTTTATGAAGCAAATACTCCATGACTGGGACGATGAACGATGCGCAAAAATCCTTGAGAATTGTCACAGAGCTCTGCCTGAGAATGGCAGAATCGTAGTGGTTGAGATCGTGGTGTCACAGCATGACCAGAACCGAAGTCAACACGTTGAAATGGTGGCAAGTTTGACTATGCTAGCGCATACTAACGGAAGGGAAAGGAACGAGCAACAGTGGAGGAGATTATTTGAAAGCTCAGGCTTCTCTACACTAAAAATGGTTGGGCTACTTGGAAATACACACTTCAGCGTTTTGGAGGCTACCAAGGCCAAGATTCACTGA___GATGGATTAGATTGAAGGACAGTTCTGATTTACTAGGTCAGCAGTGCTTACATCTTAGTCAGAAGCCATGTTTTCGTTTGCTATTTAGTGTTTTACAGAAACATTTCAAAGCACTGGGAGGACAATATATTGTACATCTGAATTTAAGTGTTTCTGGTGATCAGTTATGCTTTTATTAGTGTAAGTATATAAGAAGCAACAGGGTTGCTGAGCAACAAGTCTCTATTTTAGGGGAGGGGAATGTAGTTTGGTTCATAATAAACATGTTTAGGCAAAAGAAAATGGTCAGGTATGTAAGCAATTGATATGATTTAAACTTGATAT

Fln Alignment:

sp_v1.1_unigene5576___MDLIFSFAPALALKSAVLLKIPDIIATAGPDPDSSLSLRQIAARLPTQTPHLDY-LSRILRYLSTLGIFI--ESQTSSDPLDFHYGLTHTAKCYFLSDQNENKPCSMVPLLLMQTHEKLMAPWHHFHECVLQGEGCEGAFTKAHGKDVWAYCMDDPNLNTVINNAMASFTNIVMIPFLSVYEGFKSGEKLRVVDVGGGKGAAIAQIVKAYPHINGINFDLPHVIATAPPISDVQHVGGDMFHSVPSGDVIFMKQILHDWDDERCAKILENCHRALPENGRIVVVEIVVSQ-HDQNRSQHVEMVASLTMLAHT-NGRERNEQQWRRLFESSGFSTLKMVGLLGNT
Q8LL87______________MSLASASVLPMVLKSAIELDLLELIAKAGPG--AYVSPSELAAQLPTHNPEAPIMLDRILRLLATYSVLDCKLNNLADGGVERLYGLAPV--CKFLTKNADG--VSMAPLLLMNQDKVLMESWYHLKDAVLDGGI---PFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILEVYRGFEGLKT--VVDVGGGTGATLNMIISKYPTIKGINFELPHVVEDAPSHSGVEHVGGDMFVSVPKGDAIFMKWICHDWSDDHCRKLLKNCYQALPDNGKVILAECVLPEAPDTSLATQNVVHVDVVMLAHNPGGKERTEKEFEALAKGAGFKEFRKVCSAVNT

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
142	40	60			1.0
709		78		21	1.0
982	90	9			0.999872
1061		12		87	0.999964
1402			50	50	1.0
1472		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain