SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5569

Length: 1730 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5569

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoglycerate kinase n=3 Tax=Picea sitchensis RepID=A9NW50_PICSI	-	-	79%
FL-Next	sp=Phosphoglycerate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	phosphoglycerate kinase	-	-	76%

Source	InterPros	Term	Type	Identity
Blast2go	Phosphoglycerate kinase	IPR001576	-	76%
Blast2go	Phosphoglycerate kinase, N-terminal	IPR015824	-	76%
Blast2go	Phosphoglycerate kinase, C-terminal	IPR015901	-	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLT2

Fln msg:

Fln protein: MAKYNSENGLRVGYSVQDGIGEVEIDPRLPLLQDADLRDKVVLLRVDHNVVKKGKILDQYRIDVTLPTMYNIVERGGRPIIMTHIGRPYDKKTKTITTLQDESVDAVVAYLQRKLHIKFAVPRFSTTEKNGILDIDTSINWLIHDLKSRKIGGIYLPNTRWFAGEEDKGEKLNRFVIQLSALADVYVNDAFGSWQPHGSTYHIAKYLPSYAGLCMQGELYHVQSVLNPSKPFVAIVAGAKYDTKIGPLKQMYKKVDKLVLGGIIYNTYLCAKYGVKIAGVEESDIELAKELVEQDKVHKKILELQVLVETDTLDGRFEGKFRTIDVKDFAPGQTYKYVVDVDPVSFERDEVKQAMNSAKTIFVNAVMGLMPHFWHGTSKMDEVIDKNRSAQKFFGGGDTLQTFKSLHPALYEAALNNIKYYLFTGGGTVLKVIEEGDPMGLETVKALIDNKANYIKRSQNN*

Protein Length: 463

Fln nts: ATGGGGGAAACTCGTACTTTCCTCGCACGCAAGTTCTCCACGCCGCGGTTTACTTGAAATGCCGCGGAACCTAGACAAATATCAACGAATTTGGGGCTGTGGCGGGTAAAGATGGCTGAATTGAGCAGATATAAATTAAGGGAGAGGGTCTATCCCCAAGAACAAACAAGGAATTACTAATCAAGGGAATACTAATCAATAACT_-_ATGGCTAAGTATAATTCAGAAAATGGCCTGCGTGTTGGCTACAGCGTGCAGGATGGAATTGGCGAAGTGGAGATCGATCCGAGGTTGCCTCTGCTGCAGGATGCCGATCTCAGAGACAAGGTCGTTCTTCTCAGAGTCGATCACAACGTCGTGAAGAAAGGCAAGATTCTAGATCAATACAGAATCGATGTGACTTTACCAACTATGTACAACATAGTGGAGCGAGGTGGAAGGCCCATTATCATGACTCACATTGGACGCCCATATGACAAGAAGACAAAAACTATCACTACACTCCAGGATGAATCTGTGGATGCTGTTGTTGCATATTTGCAACGGAAGCTCCACATTAAATTTGCAGTTCCCCGCTTCAGTACAACAGAAAAAAATGGAATTCTGGATATTGACACCTCCATCAACTGGCTGATCCATGACCTTAAGAGTCGGAAGATTGGTGGAATCTACCTGCCAAATACTCGGTGGTTTGCAGGGGAGGAAGACAAAGGAGAGAAGCTTAACAGATTTGTCATTCAGCTCTCTGCCCTAGCTGATGTATATGTTAATGATGCATTTGGCTCATGGCAGCCTCATGGTTCCACATACCATATTGCGAAATACCTTCCCTCATATGCAGGACTATGCATGCAGGGCGAACTTTATCATGTGCAATCTGTCTTGAATCCCAGCAAACCATTTGTTGCAATTGTTGCTGGTGCAAAGTATGATACGAAGATTGGTCCATTAAAACAGATGTACAAGAAAGTTGATAAGTTGGTTCTGGGTGGTATTATTTACAATACTTATCTATGTGCTAAATATGGAGTTAAAATTGCTGGTGTTGAGGAATCAGATATTGAACTTGCAAAAGAGCTGGTAGAACAGGATAAGGTGCACAAAAAAATTCTCGAGTTGCAGGTTCTGGTTGAAACTGATACTCTGGATGGTAGATTTGAAGGGAAATTCAGAACGATTGATGTCAAGGACTTTGCTCCTGGCCAGACTTACAAGTATGTTGTTGATGTTGATCCTGTTTCATTTGAGAGAGATGAGGTTAAACAAGCAATGAACTCAGCTAAGACTATATTTGTTAATGCTGTGATGGGACTCATGCCGCATTTTTGGCATGGTACAAGCAAAATGGATGAGGTCATTGATAAAAATCGTTCTGCTCAAAAATTCTTTGGAGGTGGTGATACCCTTCAGACTTTTAAAAGCCTTCATCCAGCCCTGTATGAAGCTGCATTGAACAATATCAAATACTATTTATTTACAGGCGGTGGCACTGTTTTGAAAGTTATTGAAGAGGGAGATCCAATGGGTCTAGAGACTGTGAAGGCTCTTATTGACAACAAAGCTAACTATATCAAGAGAAGTCAAAATAATTGA___AGCTAGTTTATGGCAAGAGGTTTTTGGCTTGCAGAATAAGGGATTGATTAGCTCGTGCTGTTTGTTAGAACGAAAAGCAGCACGTAGAGATTTACGAAAGGAATATTTGGTAGAATTTTTTATTTATTGGAATATTTGGT

Fln Alignment:

sp_v1.1_unigene5569___MAKYNSENGL-RVGYSVQDGIGEVEI-DPRLPLLQDADLRDKVVLLRVDHNVVKKGKILDQYRIDVTLPTMYNIVERGGRPIIMTHIGRPYDKKTKTITTLQDESVDAVVAYLQRKLHIKFAVPRFSTTEKNGILDIDTSINWLIHDLKSRKIGGIYLPNTRWFAGEEDKGEKLNRFVIQLSALADVYVNDAFGSWQPHGSTYHIAKYLPSYAGLCMQGELYHVQSVLNPSKPFVAIVAGAKYDTKIGPLKQMYKKVDKLVLGGIIYNTYLCAKYGVKIAGVEESDIELAKELVEQDKVHKKILELQVLVETDTLDGRFEGKFRTIDVKDFAPGQTYKYVVDVDPVSFERDEVKQAMNSAKTIFVNAVMGLMPHFWHGTSKMDEVIDKNRSAQKFFGGGDTLQTFKSLHPALYEAALNNIKYYLFTGGGTVLKVIEEGDPMGLETVKALIDNK
B8LLT2______________MAPYGQENGLTRIGYSVDDGLENDKIADPRLPLLPDADLKDKIVLLRVDHNVVKKGEILDQYRIDVTLPTLYNITERGGRPILMTHVGRPYDKKNKTVTIRKDESVDAIVAYLQRKLRIKFVVPKFNYDEKDGILDIDTSINWLITDLRKRKIGGIYLPNTRWFAGEEDKGEKLERFAIQLAGLADVFVNDAFGSWQPHGSTYHITKYLPSYAGLCMQDELYHVEAVLNPTRPFIAIVAGSKYDTKIGPLNQIYKKVDKLVLGGVIYNTYLCAKYGVKIAGVQDSDIELAKELVEQDKTQGKIVEMDILVETDTLSGRFEGKYRAVNVKDFAPGKTYNYIVDIDPLSLESEDVLQALNSAKTIFVNAVMGFMPNFWHGTSKLDEVIDNNQSAKKYFGGGDTLQAFKSLHPNLYQAALDNTNYYLFTGGGTVLKVIEEGDSMGLDTVRALIENK

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
24		66	33		0.997452
27		66	33		0.997452
28			66	33	0.997452
32			66	33	0.997452
40	25	75			0.996473
42		75	25		0.996473
43		75	25		0.996473
44	75		25		0.996473
45		75	25		0.996473
233	66		33		0.997452
261	50		50		1.0
561		33		66	0.997452
577		66		33	0.997452
739	20	80			0.995493
931	80	20			0.999996
943			70	30	1.0
967	22		77		0.999999
976	90	10			0.90298
979		10		90	0.90298
981	90			10	0.90298
982			10	90	0.90298
984	90	10			0.90298
994	10		90		0.90298
1000	10			90	0.90298
1001	70	30			1.0
1003		30		70	1.0
1006	10			90	0.90298
1034		11	88		0.923564
1051		11		88	0.923564
1060	88			11	0.923564
1070		12	87		0.992554
1103	14		85		0.993533
1104		14		85	0.993533
1105	14		85		0.993533
1118		80	20		0.995493
1177		33		66	0.997452
1273	66	33			0.997452
1275		66		33	0.997452
1276	66	33			0.997452
1277	66		33		0.997452
1281	66	33			0.997452
1284		66		33	0.997452
1285	66		33		0.997452
1289	66		33		0.997452
1290	66			33	0.997452
1291		33	66		0.997452
1294	33			66	0.997452
1296		33		66	0.997452
1394			25	75	0.996473
1396		25		75	0.996473
1400		25	75		0.996473
1401		25	75		0.996473
1411	25	75			0.996473
1619	25		75		0.996473
1646			75	25	0.996473
1677		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain