SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5559

Length: 866 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5559

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein binding protein, putative	-	-	58%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	59%
Blast2go	protein	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Tubulin-tyrosine ligase	IPR004344	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9MSZ1

Fln msg: Distance to subject end: 392 aas, your sequence is shorter than subject: 288 - 868

Fln protein: VETMEAVIQTVSRLSKLRALWLNENPVSKSYGEALRNTLLEYLPELEIYNSQFTSNYSAWALGFCAGIYGAEKPFGTQQGTHILKDVKELDLSNRSIHNLSDKVFNPLELPLLTALNLRGNSLSQNSEDNLLELLRCFVNLRSLEIDIPGPLGSSAVRIVESLPGLSDLNGVSVFKILEEEKDVVDAKLQPRLPEWCIGEPVADRILRAMWLYLMTYRLADEEKLDETPVWYVMDELGSALRHSDTPNFKIAPFLFMPDGKLTSAISYSLLWPINDTYKGEECLRDYL

Protein Length: 289

Fln nts: AAGTGGAAACAATGGAAGCAGTTATACAAACAGTTAGTAGATTGAGTAAGCTGCGAGCTCTTTGGTTAAATGAAAATCCAGTTTCTAAAAGCTATGGTGAGGCTTTAAGAAACACTCTGTTGGAATATTTACCTGAGTTAGAAATATATAATTCTCAGTTCACTAGCAACTACAGTGCATGGGCCCTTGGATTCTGTGCTGGAATTTATGGAGCAGAAAAGCCTTTTGGTACTCAACAAGGAACACACATATTAAAAGATGTCAAAGAACTTGATTTATCTAACCGATCAATTCATAATCTTTCAGATAAGGTGTTCAATCCTTTGGAATTGCCACTTCTTACAGCTCTGAATCTCCGAGGGAATTCATTGAGCCAGAATTCAGAAGATAATCTGTTGGAGTTGTTGCGATGTTTTGTAAATTTACGATCATTGGAGATTGATATTCCGGGGCCCCTTGGAAGCAGTGCAGTAAGGATTGTGGAATCCCTTCCCGGTTTGTCAGACTTAAATGGTGTTAGTGTTTTTAAAATCCTGGAAGAAGAAAAGGATGTTGTTGATGCTAAGCTTCAACCTCGTCTTCCTGAATGGTGCATTGGAGAACCAGTTGCAGACCGTATTCTTCGTGCAATGTGGTTATATTTGATGACATACAGACTTGCTGATGAAGAAAAGCTGGACGAAACTCCTGTTTGGTATGTGATGGATGAGCTTGGTTCAGCATTGCGGCATAGTGATACACCAAATTTCAAAATTGCTCCATTTCTATTCATGCCAGATGGAAAATTAACCTCAGCAATAAGCTATTCTCTGTTGTGGCCAATCAATGATACATATAAGGGTGAAGAATGCTTACGTGACTATTTG

Fln Alignment:

sp_v1.1_unigene5559___VETMEAVIQTVSRLSKLRALWLNENPVSKSYGEALRNTLLEYLPELEIYNSQFTSNYSAWALGFCAGIYGAEKPFGTQQGTHILKDVKELDLSNRSIHNLSDKVFXXXXXXXXXXXXXRGNSLSQNSEDNLLELLRCFVNLRSLEIDIPGPLGSSAVRIVESLPGLSDLNGVSVFKILEEEKDVVDAKLQPRLPEWCIGEPVADRILRAMWLYLMTYRLADEEKLDETPVWYVMDELGSALRHSDTPNFKIAPFLFMPDGKLTSAISYSLLWPINDTYKGEECLRDYL
B9MSZ1______________LENVEIVVQEVTKLKNLKALWLNNNPVLENCDGCMADTIFKGCPGLEIYNSCFTSNFGEWALGFCGGVYEKDNPCPIHQDNHPLQSVTSLDLSNRSIHSLINKAFSPVEMPSLSHLNIRGNPLKQNSVSELFKVLKGFTSLQTLEVDLPGPLGESAIEILESVPNLSQLNGVNVSKILETGNHVIDAVLQPRLPEWTAEEPLADRVINAMWLYLMTYRLADEEKIDETSVWYVMDELGSALRHSDEPNFRVAPFLFMPEGNLDSAVSYSILWPIQNVQNGDECTRDFL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
394		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain