SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5540

Length: 1871 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene5540 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cop9 complex subunit, putative; K12178 COP9 signalosome complex subunit 4	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	cop8 (constitutive photomorphogenic) homolog	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	G2 phase of mitotic cell cycle	GO:0000085	Biological Process	90%
Blast2go	cullin deneddylation	GO:0010388	Biological Process	90%
Blast2go	protein binding	GO:0005515	Molecular Function	90%
Blast2go	signalosome	GO:0008180	Cellular Component	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR01

Fln msg:

Fln protein: MAGEIESALHSAAAITDQRQKIEQYKLILASIFSSNNVQNAKAFIDHMVSDDVPLVASRQLLQIFAQELGQLEPEAHKEVAHYALAQIQPRVVSFEEQVSIMREKLAELFETEQQWSKAAQMLSGIDLDSGIRMLDDAYKLSKCVQIARLYLEDDDAVNAETFIKKASFLVSNRHDEALNLEYKVCYARILDMKRKFLEAALRYYEISQIEKRQIGDKWIDEDALQQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLSDNSTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPEKAEKIASRMICEDRMRGSIDQVEAVIHFEDDIEELQQWDQQIVGLCQALNDVLDSMAKKGLTIAV*

Protein Length: 403

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTTTTTCGAAGAGCCCAGGTACCCTCAGACAGTCGAACCAGAAAAACGGAGTGAAACAAGAAAAACGGAGTCGGGGAAAATCGATCTGCTAACAGAGTCAACAACGCAAATTCAAGGACG_-_ATGGCAGGCGAAATAGAGAGCGCTCTGCACAGCGCTGCTGCCATTACTGATCAGAGGCAGAAGATAGAGCAGTACAAGCTTATTCTCGCCTCCATTTTCTCCAGCAATAATGTTCAAAATGCGAAGGCTTTCATTGATCATATGGTGTCCGACGATGTGCCGCTGGTGGCTTCGAGGCAACTGCTGCAGATATTTGCGCAGGAGTTAGGGCAGTTAGAGCCCGAGGCTCACAAGGAGGTTGCCCACTATGCTTTGGCTCAAATTCAACCCAGGGTTGTTTCCTTCGAAGAACAGGTATCCATCATGCGGGAGAAGCTTGCTGAATTATTTGAGACTGAACAACAATGGTCAAAAGCAGCTCAAATGCTCAGTGGGATTGACTTAGATTCTGGCATAAGGATGCTTGATGATGCATACAAACTATCAAAGTGTGTCCAGATTGCTCGTTTATACTTGGAGGATGATGATGCTGTTAATGCAGAGACATTTATAAAAAAGGCTTCCTTTTTAGTGAGCAATAGGCATGACGAAGCATTAAATTTAGAATATAAGGTTTGTTATGCGCGCATTTTGGATATGAAACGGAAATTTCTGGAAGCTGCACTTCGTTACTATGAGATATCACAGATTGAAAAGCGCCAAATTGGAGACAAGTGGATAGATGAGGATGCACTCCAACAAGCACTTAGTGCTGCTGTGACATGCACTATTCTTGCTGCTGCTGGGCCCCAACGCTCCAGAGTGCTTGCTACACTTTACAAGGATGAAAGATGTTCCAAACTAAAGATCTACCCAATTTTGCAGAAGGTTTATCTAGAAAGAATTCTTAGGAAGCCAGAAATTGATGCATTTGCTGAAGAACTCAAACCCCATCAGAAAGCTCTCCTATCAGACAACTCAACTGTTCTGGATCGTGCTATGATTGAGCATAATCTTCTGAGTGCAAGCAAACTTTATACAAATATAAGCTTTGAAGAGCTGGGCACATTGCTTGGCATTGCTCCTGAAAAGGCTGAGAAAATAGCTTCACGAATGATTTGTGAGGACCGCATGAGGGGTTCAATTGATCAGGTTGAGGCAGTCATACACTTTGAGGATGATATAGAAGAGCTGCAGCAGTGGGACCAACAAATTGTAGGCCTATGTCAAGCGCTGAATGATGTCTTGGATAGCATGGCTAAGAAAGGGCTGACTATAGCAGTGTAA___GAGAAAATTAGTGTGATGGGAAGATTCTTCAAGGGAATAACTGAATCACAGTATTATTTAATTTTCTTGGCTCCATTGGTGGTTGATACGTTCATTGTCTTTTAGATGAACTGACGCACGGTGGTGCTTTTTTTCCTGCTTATGATACGCTCTTTTGTAGCCAGTTTATGCTGAAAACAAGAAAGCATGGTGTAAGTTTGGAATAAATTGTCAAATTCAGAACAATTTTCTTGGCTATGTTTGTGGTTTAAACATTCTTGGTTTTTGAGATGAAGTGAAGGCCCAGTAGTGGCTTTTCTTTCGGATATGACAACTTTTTGCCTGTTTTTTTCTGAAAACAAGCATGTGTGGTGTAAGCTTGGAATGAACTGGCAAATTCGGAACAGATGACATGAGTTGGATATCATGAGACAAATAGAACCTCATTAAGTCACTAGTAAATTTGAAATATTTTTGTAAGCTGTTTGAACAAGTACAAATATAGGATAAATGCAACAGTTATTATGCTGTGAAAAGTTAC

Fln Alignment:

sp_v1.1_unigene5540___MAGEIESALHSAAAITDQRQKIEQYKLILASIFSSNNVQNAKAFIDHMVSDDVPLVASRQLLQIFAQELGQLEPEAHKEVAHYALAQIQPRVVSFEEQVSIMREKLAELFETEQQWSKAAQMLSGIDLDSGIRMLDDAYKLSKCVQIARLYLEDDDAVNAETFIKKASFLVSNRHDEALNLEYKVCYARILDMKRKFLEAALRYYEISQIEKRQIGDKWIDEDALQQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLSDNSTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPEKAEKIASRMICEDRMRGSIDQVEAVIHFEDDIEELQQWDQQIVGLCQALNDVLDSMAKKGLTIAV
B8LR01______________MAGEIEGALQSAAAITDQRQKIEQYKLILASIFSSNNVQNAKAFIDHMVSDDVPLVASRQLLQIFAQELGQLEPDAHKEIAHYALAQIQPRVVSFEEQVSIIREKLAELFETEQQWSKAAQMLSGIDLDSGIRMLDDTYKLSKCVQIARLYLEDDDAVNAEIFIKKASFLVSGSHDEALNLEYKVCYARILDMKRKFLEAALRYYEISQIEKRQIGDKWIDEDALQQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNSTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPEKAEKIASRMICEDRMRGSIDQVEAVIHFEDDIEELQQWDQQIVGLCQALNDVLDSMARKGLTIAV

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
357		75	25		0.996473
542	6			81	0.999943
668	90		10		0.999898
1279	85			14	0.993533
1280	85		14		0.993533
1281	85		14		0.993533
1284	85			14	0.993533
1288	85		14		0.993533
1289		14		85	0.993533
1291	14			85	0.993533
1292	14		85		0.993533
1294	85			14	0.993533
1300			11	88	0.923564
1319		87		12	0.992554
1737	91		8		0.999766
1739		8		91	0.999766
1740	8			91	0.999766
1743		8	91		0.999766
1744	8			91	0.999766
1745	8			91	0.999766
1747			8	91	0.999766
1749		21	78		1.0
1752			8	91	0.999807
1753	8	91			0.999807
1754		8		91	0.999807
1758	85		14		1.0
1774		76		23	1.0
1808		10		90	0.90298
1809		20	80		0.999996
1810		20	80		0.999996
1811	22			77	0.999999
1822		14	71		0.984337
1823	71	28			1.0
1824		28	71		1.0
1825		28	71		1.0
1826	28		71		1.0
1828	60	20	20		0.99255
1849	66		33		0.997452
1850	66	33			0.997452
1851	33	33	33		0.997753
1852		33		66	0.997452
1853		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain