SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5516

Length: 1779 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5516

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PMP, putative	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	59%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LP47

Fln msg:

Fln protein: MEFLSINWATFILLLSCALLPQQIKAEATGGGSLLFLDNPHHRFFRTESLASDSEEISMTQSDVASTVSVLLGFAPSSSHPSVSSSKLDGLLLPNPFDRPRCVLMLEARGIDQELLSELDLPKLGLGAYNYRQLVAESSQTAVELPEDDVILESLNEASGDECDTHCIEQELVDLASWLGGSYTAEEQLLQGKFSIPLSKGSLLNLDLLKRADQIFAKELVSLRRNIRGVVSMHDLAEGSADPAMLLMGSFVGVQALREHYGQDDISREGLELFLNVAARLLDSLQLSYGGQFVGVVVMNDNSVPASEGMFDVKLSSRTSRWLAEKFPAAPNSTSAEVKLTRRALAWSTAIILLIATLMGVHYLFNMPLTRDTLLYSNVKLD*

Protein Length: 384

Fln nts: ATGGGGAGAGATCTTCCCCTCTCAAATATCAACGAAGGCTCAACTCATCCCTTCCCTTCGTGCAGCTGCGACTGAAATATTCACAGGCGGAAAGAAAGGAAATCAGGTCCAAAATCGATTAGACAGTGGACAGCCAGCC_-_ATGGAATTCTTGAGTATCAATTGGGCCACATTTATACTGCTGTTATCATGCGCTCTCCTGCCACAGCAGATCAAGGCAGAGGCAACGGGAGGAGGATCATTGCTGTTCCTGGACAACCCACATCATCGTTTTTTCCGGACTGAATCTCTTGCATCTGACTCCGAGGAGATTTCTATGACTCAGTCAGATGTTGCGTCAACTGTGTCAGTGCTGCTTGGTTTTGCACCATCGTCTTCACATCCTTCAGTATCATCTTCTAAGCTAGATGGGCTTCTTTTACCAAATCCATTTGATCGACCACGTTGTGTTTTAATGTTGGAAGCCAGAGGAATTGATCAAGAATTGTTGAGTGAGCTGGACCTTCCAAAGCTTGGACTAGGGGCATACAACTACCGGCAGCTAGTTGCTGAATCTAGTCAAACAGCTGTTGAACTTCCTGAGGATGACGTTATCCTTGAGTCTTTGAATGAAGCCTCAGGTGATGAATGTGACACCCATTGCATTGAACAAGAACTTGTGGATCTTGCCTCTTGGCTAGGAGGATCCTACACTGCAGAAGAACAGCTTTTGCAAGGGAAGTTTAGTATTCCTTTATCTAAGGGATCCCTTCTGAATTTGGATCTTTTAAAGAGAGCAGATCAAATATTTGCAAAGGAGCTTGTTTCTCTTCGACGGAACATTAGAGGGGTAGTTTCTATGCATGACCTTGCAGAGGGCTCCGCGGATCCCGCAATGCTTTTAATGGGTTCTTTTGTAGGTGTTCAGGCTTTGCGGGAACATTATGGTCAGGATGACATTTCTCGTGAAGGACTAGAGCTCTTCCTAAATGTGGCAGCAAGGCTTCTCGATTCATTGCAATTATCATATGGTGGCCAATTTGTAGGAGTTGTTGTGATGAATGATAATTCAGTTCCGGCTTCCGAAGGAATGTTTGATGTCAAATTGTCTTCAAGAACATCACGATGGTTAGCTGAGAAATTTCCAGCTGCACCAAATTCTACAAGTGCAGAAGTGAAACTCACAAGGAGAGCCTTGGCATGGTCTACTGCGATTATTCTACTCATAGCAACACTTATGGGGGTTCACTATCTTTTCAACATGCCTCTCACTCGGGATACACTTTTGTATTCCAATGTCAAACTGGATTAA___GGCTGTGATAACTTGCATGCTTTATCTGCTATTCTTGGACTGCAGAAAGTGACTCAGATTCGGTCTGTTTGAGAAACGTGCCGTTGTTGTCTGGCAATATGTCGTTGGCTTTGAACTCCAAGTTCCTTCAATTATTTATCTGTAATTTGGGACTGTAAGGGTAGTGACACATTAAATGACTGGGACAGATACATCTCGTTGGGTGGATTTTTAGCTTCGACTGTTGTAAAGAAATTTCTGCCAAAGGACATCGAGGCTTATGATAACTCCAGTATTTTTTTTTCCTAACCTAGGGAGCTAATAATCATTTGCCACGAAGCTTCTGTCAACAATCAATACTTCACACAATATTTGTTTGCTCGTTACTTGTTCTACATTCTTACTTGTTCTACATTCTTAATGGATAGGATATCAACGGTTTGTTCAGAATAGTTGGTGTTTTCTCTTGTAAACTTTTTTCAAGCAATTGATACATGTACAGGAAGACATGA

Fln Alignment:

sp_v1.1_unigene5516___MEFLSINWATFILLLSCALLPQQIKAEATGGGSLLFLDNPHHRFFRTESLASDSEEISMTQSDVASTVSVLLGFAXXXXXXXXXXXKLDGLLLPNPFDRPRCVLMLEARGIDQELLSELDLPKLGLGAYNYRQLVAESSQTAVELPEDDVILESLNEASGDECDTHCIEQELVDLASWLGGSYTAEEQLLQGKFSIPXXXXXXXXXXXXXRADQIFAKELVSLRRNIRGVVSMHDLAEGSADPAMLLMGSFVGVQALREHYGQDDISREGLELFLNVAARLLDSLQLSYGGQFVGVVVMNDNSVPASEGMFDVKLSSRTSRWLAEKFPAAPNSTSAEVKLTRRALAWSTAIILLIATLMGVHYLFNMPLTRDTLLYSNVKLD
B8LP47______________MEFFGINWATCILLLSCALLPQQMKAEATGGGSLLFLDNPHHRFFRTESLESESEEISMTQSDVASTVSVLLGFAPSSTNPSVSSSKLDGLLLPNPFDRPRGVFMLDARGIDQELLSELDVPKLGLGAYSYRQLVAESSHTAVELPEDEVILESLNEASGDECDAHCIEQELVDLASWLGGSYTVVEQLLQGKFSIPLSKGSFLNLDLLKRADQIFAKELVSLRRNIRWVVSMHDLAEGSPDPALLLMGTFVGVQALREHYGQDDISREGLELFLNVAAKLLDSLQLSYGGQFVGVVVMNGNAVPASEGMFDVKLSSRTSRWLTEKFLAESNSTTAEVKPARRALAWSTAIILLIATLMGVYYLFNMPLTRDTLLYSNVKLD

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1609	14	85			0.993533
1612	85			14	0.993533
1614		85		14	0.993533
1615	14			85	0.993533
1656		16	83		0.994512
1673	12	87			0.992554
1675			12	87	0.992554
1676	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain