SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5515

Length: 1515 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5515

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	40%
Blast2go	ww domain containing expressed	-	-	9.72951e-25	51%

Source	InterPros	Term	Type	e value	Identity
Blast2go	WW/Rsp5/WWP	IPR001202	-	9.72951e-25	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9IAD6

Fln msg:

Fln protein: MFKASVDACNKKRKMDSEWLDSCKGGQKTSCNPSIGVELHMTSPLPPEWEQCLDLQSGRIYYSNRSTQKKTWQDPRGGEGNMCELSKSLRLDLELNLPFKTEPDCESPTSDCSSSFLEENSNRRSEMIAVACAQCHMFVMLSKACPLCPNCKYVHPTDRFSFSSNDKKGDAPARQTLRLLDYGIEPKSNKPRKDDE*

Protein Length: 198

Fln nts: GGTCTGTATTTTCCAATTTCCTATATAAAAATATCCCTCGTCTTCAGGATTTGTCATTTCTCCATCATTTAAGAGGCATCAATGAAGTCTCAGAGTACGAATATCTTTGCTCGGATTGTTAACAGGAGATGGAGGTCCTCTTGCCAAAGCCGTGAAGAGCCATGCCAAGAAGATTTATGGGCTTCTTCATCTGCCAAATACTGCTCATTCGTAGAATACACACTATAGATTCTGTAACTCCAAATTTGAACCGTTTCTTTCTTGTAATTAGATTCTCTTTAATGGCAGCTGCAGAGCTTGGCCTCAGCATTTGAATATCCCTTTGAACTCTGAGCTTGTTGGTTCGTTCATTAATTTATTCGCGCATTTATCCATCATACGTTGTTCATAATATTTTATATAAGATACGGCATATTCTTATTACTGCAGCTACCTACAAACTCTGTTCCAAGCCTTTGTTGATTCAATTACAAGCACCAAACCAATTTGTTGAATGGAATAGGCAATTCAATTCAAGGGGTGCAATTACTAGAGCGATTCATTGAGAGATTAATGTGTTGTCAATTGGGTTATTACAGCAGATGCAAAAACAACAGTAGCTAGTTAGAAGCAGCAACAGCAGCTGCTAGTTTGAATGTTGGACTTACAGCTGTCTCAATAACATCCTCGGTATCTCCGCTCCGGTAAAAGTGGGGAAGCGGGAGAGCTATGATATATGTATAAATAGTGGTGCCTATGCAGGAAAA_-_ATGTTCAAGGCTTCAGTGGACGCTTGCAACAAAAAGAGAAAAATGGATTCTGAATGGCTTGACAGCTGCAAGGGTGGGCAGAAGACGAGCTGTAATCCAAGTATTGGCGTTGAGCTTCATATGACATCACCACTTCCTCCTGAATGGGAACAATGTTTGGATCTTCAGTCTGGTAGAATATATTATTCCAACCGTAGCACTCAGAAGAAGACCTGGCAGGATCCCAGAGGAGGGGAAGGCAATATGTGCGAGTTATCCAAAAGCCTGCGGTTGGATTTGGAGTTGAACCTTCCATTCAAAACCGAACCAGATTGCGAATCCCCAACATCTGATTGTTCCTCCTCTTTTCTGGAAGAAAATTCCAACAGAAGATCTGAAATGATTGCAGTAGCCTGTGCTCAGTGCCATATGTTTGTGATGCTCTCTAAGGCCTGCCCATTGTGCCCTAATTGCAAATATGTGCACCCCACTGATCGATTCTCATTTTCATCAAACGACAAGAAAGGGGATGCCCCTGCTAGGCAGACTCTGCGTCTGCTTGATTATGGCATAGAGCCCAAGAGTAATAAGCCCAGAAAAGATGATGAATAG___ACCTAAGGGCACAGGATTTGAACTACCCTTTTGTAATTTCAGGCGCTTATTGTCGATGAAGGTTTCAGTTTCTGAAGAATTTTTACGAAAAAATATATACCAGTATATACCATTAGTGTCTGTTGATGGTAGATACTGCAATCGGTATGTACCCAAAATAGCTTTGAGTAATCTTTTG

Fln Alignment:

sp_v1.1_unigene5515___NKKRKMDSEWLDSCKGGQKTSCNPSIGVELHMTSPLPPEWEQCLDLQSGRIYYSNRSTQKKTWQDPRGGEGNMCELSKSLRLDLELNLPFKTEPDCESPTSDCSSSFLEENSNR-----RSEMIAVACAQCHMFVMLSKACPLCPNCKYVHPTDRFSFSSNDKKGDAPAR--QTLRLLD
B9IAD6______________SRKRKFFSDQYQLLKNGPPIQAS----VDLHVKDPLPLDWEQCLDLESGRMYYLNRKTLRKSWNWP-----------KKQKLDLELNMS-STIPNCPDECSSSNSS-LEDSNNKNHASSNSNMVALACLNCHLLVIFSKSSPSCPNCKYVH---SFPTLQSPQRKVSPTRSLSTLSLLN

SNPs (tot: 5)

Position	A %	G %	T %	Probability
1079		75	25	0.996473
1188		16	83	0.994512
1355	90	10		0.90298
1356	10		90	0.90298
1358	11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain