SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5506

Length: 1282 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5506

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein-L-isoaspartate O-methyltransferase n=1 Tax=Picea sitchensis RepID=D5ADW3_PICSI	-	-	93%
FL-Next	sp=Protein-L-isoaspartate O-methyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	IPR000682	-	0.0	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADW3

Fln msg:

Fln protein: MEHFWSRSWADNSSLVEHLQQYGVIKSSRVADVMQKIDRGLFVPKGNPPYLDTPMAIGYNATISAPHMHATCLELLKEHLQPGMRALDIGSGTGYLTACFAMMVGPQGHAVGVDHIPELVAMSIENVNKSKAALLLPDGSLSLYAGDGRLGWPDLAPYDAIHVGAAAPEVPKPLIEQLKPGGRMVIPVGDFFQDLQVIDKQLDGSLKVHSETSVRYVPLTSTQEQLYGH*

Protein Length: 231

Fln nts: ATGGGCTTCGTTCTCTTGGCTGCTGTCGTCGTCTGGGTTGCGTTCTCTGCCATGTTATTTCTGCACTCACCGACTGCGATTGCCGACTTTTCCTAACCCTAAAGTTCGCTTACGGCGCACTGTATTCGCTGCAAATATAGGCAATAATCTTCATTTCGACCTTCCTTTCGTTCAAAGA_-_ATGGAGCATTTTTGGAGCAGAAGTTGGGCTGATAATAGTTCACTTGTAGAACATCTGCAGCAATATGGAGTTATTAAATCCAGTAGAGTAGCAGATGTCATGCAAAAGATTGACAGGGGATTGTTTGTGCCCAAAGGGAACCCTCCATATTTAGATACACCCATGGCAATAGGATATAATGCGACTATCTCCGCACCGCATATGCATGCCACCTGTCTTGAACTGTTGAAGGAACATTTGCAGCCAGGAATGCGTGCATTGGACATTGGGTCAGGCACTGGTTACTTGACTGCCTGTTTTGCAATGATGGTTGGTCCCCAGGGTCATGCTGTTGGTGTGGATCACATTCCGGAGTTGGTTGCAATGTCAATAGAGAATGTCAACAAAAGTAAAGCGGCACTTCTATTGCCAGATGGAAGCTTGTCCTTGTATGCTGGAGATGGTCGACTAGGTTGGCCAGATCTGGCTCCTTATGATGCTATTCATGTTGGTGCTGCTGCGCCAGAAGTTCCAAAGCCACTTATTGAACAATTAAAGCCTGGGGGACGGATGGTCATTCCTGTTGGTGACTTCTTTCAAGATTTGCAAGTCATTGACAAGCAGCTTGATGGATCTTTAAAGGTTCATAGTGAGACATCAGTTCGTTATGTTCCTTTGACCAGTACACAAGAGCAATTGTATGGTCATTAA___TCATGATTGGTGCTGCCTTATGCTAGGAGTAAATGGTATCAGTGATTAGTCTGTGACTCTGTGTATGTGTGAGCAGAGATAAGATGCTTTCAACTTCTCTGCAGTTCTGCTTGATTTTTATTGCTTTAGGTTAAAAGATTGAAAGTCTTCCAGGCTATATATTCTAGTGTGCCGAATCACTTTTGCTGTTGTATAGAAAAGTGGTTTGATTGTTTATATAACCCTTGTATATTTGGTCAAAAGATGATATGTAAATAACCAATAATATGTGGCTTGTAAATCTGTGTGTGATATCGTCACCGAGTGATGCCCAATGCGTGTTAAGGGATGCATATGTGCTAATCTCTTCTTCTGGGTATTGTAAAGTACTCCGTCACTGCATGATGTTTCTCTGGCACTGGAAGTTTTTGGTAG

Fln Alignment:

sp_v1.1_unigene5506___MEHFWSRSWADNSSLVEHLQQYGVIKSSRVADVMQKIDRGLFVPKGNPPYLDTPMAIGYNATISAPHMHATCLELLKEHLQPGMRALDIGSGTGYLTACFAMMVGPQGHAVGVDHIPELVAMSIENVNKSKAALLLPDGSLSLYAGDGRLGWPDLAPYDAIHVGAAAPEVPKPLIEQLKPGGRMVIPVGDFFQDLQVIDKQLDGSLKVHSETSVRYVPLTSTQEQLYGH
D5ADW3______________MEHFWSRGWADNSSLVGHLQQYGVIKSSRVADVMQKIDRGLFVPEGNSPYLDTPMAIGYNATISAPHMHATCLELLKEHLQPGMRALDIGSGTGYLTACFAMMVAPQGRAVGVDHIPELVTVSIENVKKSEAALLLADGNLSLHVGDGRLGWPDLAPYDAIHVGAAAPEVPKPLIEQLKPGGRMVIPVGDFFQDLQVIDKQLDGSLKVHSETSVRYVPLTSSQEQLHGH

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
398		11		88	0.923564
501			87	12	0.992554
669			14	85	0.993533
907		8		91	0.999766
908	91		8		0.999766
1018	10			90	0.90298
1019		10		90	0.90298
1020		90		10	0.90298
1025		90		10	0.90298
1188	20		80		0.999996

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain