SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5502

Length: 936 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5502

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Anionic peroxidase swpa5 n=1 Tax=Ipomoea batatas RepID=Q5JBR5_IPOBA	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	peroxidase	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine metabolism	00360	77%
Blast2go	Methane metabolism	00680	77%
Blast2go	Phenylpropanoid biosynthesis	00940	77%
Blast2go	Biosynthesis of phenylpropanoids	01061	77%
Blast2go	Metabolic pathways	01100	77%
Blast2go	Biosynthesis of secondary metabolites	01110	77%

Source	GOs	Term	Type	Identity
Blast2go	heme binding	GO:0020037	Molecular Function	77%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Blast2go	Plant peroxidase	IPR000823	-	77%
Blast2go	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	77%
Blast2go	Haem peroxidase	IPR010255	-	77%
Blast2go	Peroxidases heam-ligand binding site	IPR019793	-	77%
Blast2go	Peroxidase, active site	IPR019794	-	77%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN21

Fln msg: Distance to subject end: 68 aas, your sequence is shorter than subject: 261 - 324

Fln protein: MAFGWCSTHITWIAFAIAFLQCTSAQLSPTFYQSTCPNVTNIVGQVIQQALQNDSRIAASLLRLHFHDCFVNGCDGSVLLDDTANFTGEKTAIPNNNSLRGFDVVDNIKSAVESACNATVSCADILAIAAEQSVVLSGGPSWTIQLGRRDSTTANATLPNTAIPAPTDNLSVITTKFQNVGLSLTDVVALSGAHTIGRARCTVFISRLYNFSGTGNPDPTLNSSYLSTLQSTCPLNGNGSVLTPLDPGTPNTFDNNYYINL

Protein Length: 262

Fln nts: ATGGGGGAGACGCCGGTGCACACAGGCGATGGTTAACTTTCAGCAGAATACACAGCCCATTGTTCGCAGTTTTGTGAGGCATATTAAACCGTAAACTCTGCACAATGTTTCAAGAATAGTGTAATGTCATTCTTCCAGTGAAAGGAATCATC_-_ATGGCTTTTGGATGGTGTTCAACTCATATTACATGGATTGCATTTGCAATTGCATTCCTTCAATGCACCAGTGCTCAGCTGAGCCCTACCTTTTACCAGAGTACATGCCCCAACGTTACCAATATAGTGGGGCAGGTCATCCAGCAAGCTCTGCAAAATGATTCAAGGATTGCGGCCTCTCTCCTTCGTTTGCACTTTCATGACTGCTTTGTTAATGGCTGTGATGGATCTGTTCTTTTAGATGACACGGCCAATTTTACAGGGGAAAAGACAGCAATTCCCAACAACAATTCCCTCAGGGGCTTTGATGTTGTGGACAACATCAAGTCTGCAGTAGAGAGTGCATGCAACGCAACAGTTTCTTGCGCCGACATTCTAGCCATTGCTGCAGAGCAGTCTGTAGTATTGTCTGGCGGTCCATCGTGGACTATACAGTTGGGAAGACGGGACAGCACCACTGCCAATGCAACTCTTCCAAACACAGCCATCCCTGCACCAACTGACAACCTCTCTGTAATCACAACAAAGTTTCAGAATGTGGGACTCTCGCTAACGGATGTAGTTGCTTTGTCAGGGGCGCACACAATCGGGCGAGCTCGCTGCACAGTGTTCATCAGCAGACTTTACAATTTCAGCGGAACGGGCAATCCGGATCCGACGCTGAATTCATCTTATCTATCCACCCTGCAAAGCACGTGTCCACTGAATGGTAACGGGAGCGTCCTAACACCACTTGATCCGGGCACTCCAAACACCTTCGACAACAACTATTACATAAATCTCC

Fln Alignment:

sp_v1.1_unigene5502___MAFGWCSTHITWIAFAIAFLQCTSAQLSPTFYQSTCPNVTNIVGQVIQQALQNDSRIAASLLRLHFHDCFVNGCDGSVLLDDTANFTGEKTAIPNNNSLRGFDVVDNIKSAVESACNATVSCADILAIAAEQSVVLSGGPSWTIQLGRRDSTTANATLPNTAIPAPTDNLSVITTKFQNVGLSLTDVVALSGAHTIGRARCTVFISRLYNFSGTGNPDPTLNSSYLSTLQSTCPLNGNGSVLTPLDPGTPNTFDNNYYINL
A9NN21______________MAFAFFSLNVELCI--LAFVVCSSAQLSPTFYQNTCPNVSSIVGQVLQQALQKDSRMAASLIHLFFHDCFVNGCDGSVLLSNSANFTGEQT---NTSSLRGFGVVDDMKAAVENECSATVSCADILAIAAERSVSMSGGPSWNVQLGRRDSTTANATLVKTAFASPTDSLSTIITKFQKLGFSVTDVVALSGAHTIGRARCQTFSSRLYNFSGTAKPDPTLNSCYLSTLQSACPQNGNMSSITSFDPGTPNTFDNNYFINL

SNPs (tot: 11)

Position	C %	G %	T %	Probability
382	85	14		0.993533
384		85	14	0.993533
387	83		16	0.994512
430		75	25	0.996473
451		80	20	0.995493
499		83	16	0.994512
518	83		16	0.994512
546	83		16	0.994512
588		16	83	0.994512
589		16	83	0.994512
852	25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain