SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5495

Length: 2254 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene5495
CGTCGTGACCTTGGCTGTCACTCGAAGATCTCTTTTCTCTTCTTCTTCGATCCCAATTATTTCGTCCCTCCATCAAAATGTTTTGCTTATCGCAGTTCCAACGCAGTTTTTTTATCACCACCACTGCTGCCATTATATTGGCAAGTCTGACTCTGAATTGCAGTGGCTCGTCCACTACTACATGCAGCAGAGGAGACCTCAGGGCGCTGCTGCGCTTCAAGGCCGGAATTATTGAGGACACCTCTGGGCGTTTGAAATCATGGAACGGCTCCAACTGCTGCGAGTGGCAGGGGGTATCCTGCAATAATCAAACTGGACGAGTTGTGGGGCTTCTGCTGCCGGGGCTCATATCCGGTGATGATTTCATATCGGATACCCAGATGAAGGGCACAATCTCCGAGTCCTTGGGAGATTTGCAGTTTCTGGAAATTTTGAACCTGGAGGACTTGAAAGAAATCACCGGTTCCATTCCCTCATCACTCGGGAAGCTCCACCGGTTGAAGAAGCTGATTCTCGACAGTAATGAGCTCAATGGTTCTATTCCTGTGTCTCTCGGAAACCTCCACAATCTGGAAGAATTGTACCTGTCGCAGAACGGGCTCAACGGAAACATTCCCGACATTTTTGGAGGTCTCAAGAAACTTCGCATTTTGGATCTCTTCACCAACCAGTTCACGGGTCGAATTCCCACCTCTATAACCGGTCTCCGCAACCTCACTACTCTCGATCTCCATGGCAATCTACTCAGTGGCTCAATTCCTTCGTCTCTGGGAGAATTGCGTTTTCTGCAGACGTTGGATATGTCTGACAATAGGCTCACGGGAAGCATACCGGATTCTATTGGTATGTTAACCAATCTGTCCNTCTTGTACCTCTTTAGCAANANACTCAGCGGNAGCATNCCGTCCNCAATTGGNAATATGAGNTCTCTGGNATTTCTTCGTCTGGAGGAAAATGAATTGAGCGGAGTNCTGCCATCTTCAATGGGAGGTCTGGTCAATCTGCAGCGAGTTTATATGTCGAATAACATGATNNGCGGCNCCATTCCTNCTNNGTGGGGTAATCTTTCAAGCCTTACGGACCTCTACCTTAACGGTAACAGGTTGTCGGGTTCGATTCCCGAGTCTATCGGAGAGCTTTCTAAGCTTCAGGATCTTGATCTCTCTAACAACTATCTCTCAGGGAGCCTTCCGAAAGAATTATCTAAGCTTTCTGATCTGCAAAATTTGGATGTTTCGTTCAATAATTTCAGGTTTGTGACTGTGCCCACAGTAATATCGAACCTCACTGGATTGCTTCAGCTCTCTCTCGCTGGTTGTGGTATCGAGGGTATTATTCCCAAGTGGTTGTCGACGATGCCAAACGGTCTGAGTACGCTTGACTTGTCGAGCAACAGCATCACGGGCACCATACCGACATGGGTGGGCAACATGACGGGATTATACAATCTCAACTTGTCAAACAACGCATTAACATCAACTCTTCCAGAGGCGATGAGTAACCTGCGAAATCTGGGCGTTCTGGACCTCCATTCAAATCACCTAACGGGACCTATAACTGCCGCATTCTCCATGCAAAGCCCGTTTCCAAATGGGCTTTTAGAGACGGTGGACTTGTCCCACAACAAATTCACGGGCTCAATACCTTCGAGTGTGGGCAATCAGAACGGTATGCAACAGCTGGTTCTGTCACACAATTCACTGCGCGGAGCAATACCCAGTACGTTGGGGAGTTTGGCACAATTGCAGACTCTGGAGCTGAATGAAAATCACTTGAGCGGCAAAATACCCAACGCGTTTGTGAACCTCACGTCTCTGTTGCAACTGAACGTATCGCATAATTCCTTGTCAGGAATGATTCCGGTTGGGGGGCTGCTTCAGAAGTTTCCAATTTCTTCATACTCTGGTAACAGAGGGCTCTGTGGAGATCCTCTTCCTGCTTGCTGACCCATGAATATTCTTCAACAATTCGAGACACGGAACCATGACAGGTTGCTCGTGTATTTATGCTTTCTAGAGAAGAGATAACTGTTCATTCCGTTCCTTTATTTTTGGACTTTCAATAAAGGGCAGAATTCAAGCAATGCCATGTAGAATTCGATAATGCTCTGCTATGCTTTCTTCAAATCTGATATACCAAGTCTACCATTATATACTATGGCTGCACTTGGTACAGTAAATCGGATTTGTAATAATATCGGATGTTTTCATTTTAGTAAGTTAAATTAAAATTGAAGTAGTTACAGGTTTGTTGG

Ace file of the UniGene sp_v1.1_unigene5495

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9S2F4_RICCO	-	-	46%
FL-Next	tr=Serine-threonine protein kinase, plant-type, putative; Ricinus communis (Castor bean).	-	-	48%
Blast2go	serine-threonine protein plant-	-	-	56%

Source	InterPros	Term	Type	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	56%
Blast2go	Leucine-rich repeat, typical subtype	IPR003591	-	56%
Blast2go	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9S2F4

Fln msg: your sequence is shorter than subject: 623 - 653

Fln protein: MFCLSQFQRSFFITTTAAIILASLTLNCSGSSTTTCSRGDLRALLRFKAGIIEDTSGRLKSWNGSNCCEWQGVSCNNQTGRVVGLLLPGLISGDDFISDTQMKGTISESLGDLQFLEILNLEDLKEITGSIPSSLGKLHRLKKLILDSNELNGSIPVSLGNLHNLEELYLSQNGLNGNIPDIFGGLKKLRILDLFTNQFTGRIPTSITGLRNLTTLDLHGNLLSGSIPSSLGELRFLQTLDMSDNRLTGSIPDSIGMLTNLSILYLFSNILSGSIPSPIGNMRSLEFLRLEENELSGVLPSSMGGLVNLQRVYMSNNMIGGTIPPWWGNLSSLTDLYLNGNRLSGSIPESIGELSKLQDLDLSNNYLSGSLPKELSKLSDLQNLDVSFNNFRFVTVPTVISNLTGLLQLSLAGCGIEGIIPKWLSTMPNGLSTLDLSSNSITGTIPTWVGNMTGLYNLNLSNNALTSTLPEAMSNLRNLGVLDLHSNHLTGPITAAFSMQSPFPNGLLETVDLSHNKFTGSIPSSVGNQNGMQQLVLSHNSLRGAIPSTLGSLAQLQTLELNENHLSGKIPNAFVNLTSLLQLNVSHNSLSGMIPVGGLLQKFPISSYSGNRGLCGDPLPAC*

Protein Length: 624

Fln nts: CGTCGTGACCTTGGCTGTCACTCGAAGATCTCTTTTCTCTTCTTCTTCGATCCCAATTATTTCGTCCCTCCATCAAA_-_ATGTTTTGCTTATCGCAGTTCCAACGCAGTTTTTTTATCACCACCACTGCTGCCATTATATTGGCAAGTCTGACTCTGAATTGCAGTGGCTCGTCCACTACTACATGCAGCAGAGGAGACCTCAGGGCGCTGCTGCGCTTCAAGGCCGGAATTATTGAGGACACCTCTGGGCGTTTGAAATCATGGAACGGCTCCAACTGCTGCGAGTGGCAGGGGGTATCCTGCAATAATCAAACTGGACGAGTTGTGGGGCTTCTGCTGCCGGGGCTCATATCCGGTGATGATTTCATATCGGATACCCAGATGAAGGGCACAATCTCCGAGTCCTTGGGAGATTTGCAGTTTCTGGAAATTTTGAACCTGGAGGACTTGAAAGAAATCACCGGTTCCATTCCCTCATCACTCGGGAAGCTCCACCGGTTGAAGAAGCTGATTCTCGACAGTAATGAGCTCAATGGTTCTATTCCTGTGTCTCTCGGAAACCTCCACAATCTGGAAGAATTGTACCTGTCGCAGAACGGGCTCAACGGAAACATTCCCGACATTTTTGGAGGTCTCAAGAAACTTCGCATTTTGGATCTCTTCACCAACCAGTTCACGGGTCGAATTCCCACCTCTATAACCGGTCTCCGCAACCTCACTACTCTCGATCTCCATGGCAATCTACTCAGTGGCTCAATTCCTTCGTCTCTGGGAGAATTGCGTTTTCTGCAGACGTTGGATATGTCTGACAATAGGCTCACGGGAAGCATACCGGATTCTATTGGTATGTTAACCAATCTGTCCaTCTTGTACCTCTTTAGCAAcAtACTCAGCGGgAGCATaCCGTCCcCAATTGGtAATATGAGgTCTCTGGaATTTCTTCGTCTGGAGGAAAATGAATTGAGCGGAGTcCTGCCATCTTCAATGGGAGGTCTGGTCAATCTGCAGCGAGTTTATATGTCGAATAACATGATtgGCGGCaCCATTCCTcCTtgGTGGGGTAATCTTTCAAGCCTTACGGACCTCTACCTTAACGGTAACAGGTTGTCGGGTTCGATTCCCGAGTCTATCGGAGAGCTTTCTAAGCTTCAGGATCTTGATCTCTCTAACAACTATCTCTCAGGGAGCCTTCCGAAAGAATTATCTAAGCTTTCTGATCTGCAAAATTTGGATGTTTCGTTCAATAATTTCAGGTTTGTGACTGTGCCCACAGTAATATCGAACCTCACTGGATTGCTTCAGCTCTCTCTCGCTGGTTGTGGTATCGAGGGTATTATTCCCAAGTGGTTGTCGACGATGCCAAACGGTCTGAGTACGCTTGACTTGTCGAGCAACAGCATCACGGGCACCATACCGACATGGGTGGGCAACATGACGGGATTATACAATCTCAACTTGTCAAACAACGCATTAACATCAACTCTTCCAGAGGCGATGAGTAACCTGCGAAATCTGGGCGTTCTGGACCTCCATTCAAATCACCTAACGGGACCTATAACTGCCGCATTCTCCATGCAAAGCCCGTTTCCAAATGGGCTTTTAGAGACGGTGGACTTGTCCCACAACAAATTCACGGGCTCAATACCTTCGAGTGTGGGCAATCAGAACGGTATGCAACAGCTGGTTCTGTCACACAATTCACTGCGCGGAGCAATACCCAGTACGTTGGGGAGTTTGGCACAATTGCAGACTCTGGAGCTGAATGAAAATCACTTGAGCGGCAAAATACCCAACGCGTTTGTGAACCTCACGTCTCTGTTGCAACTGAACGTATCGCATAATTCCTTGTCAGGAATGATTCCGGTTGGGGGGCTGCTTCAGAAGTTTCCAATTTCTTCATACTCTGGTAACAGAGGGCTCTGTGGAGATCCTCTTCCTGCTTGCTGA___CCCATGAATATTCTTCAACAATTCGAGACACGGAACCATGACAGGTTGCTCGTGTATTTATGCTTTCTAGAGAAGAGATAACTGTTCATTCCGTTCCTTTATTTTTGGACTTTCAATAAAGGGCAGAATTCAAGCAATGCCATGTAGAATTCGATAATGCTCTGCTATGCTTTCTTCAAATCTGATATACCAAGTCTACCATTATATACTATGGCTGCACTTGGTACAGTAAATCGGATTTGTAATAATATCGGATGTTTTCATTTTAGTAAGTTAAATTAAAATTGAAGTAGTTACAGGTTTGTTGG

Fln Alignment:

sp_v1.1_unigene5495___RGDLRALLRFKAGIIEDTSGRLKSWNGSNCCEWQGVSCNNQTGRVVGLLLPGLISGDDFISDTQMKGTISESLGDLQFLEILNLEDLKEITGSIPSSLG-KLHRLKKLILDSNELNGSIPVSLGNLHNLEELYLSQNGLNGNIPDIFGGLKKLRILDLFTNQFTGRIPTSITGLRNLTTLDLHGNLLSGSIPSSLGELRFLQTLDMSDNRLTGSIPDSIGMLTNLSILYLFSNILSGSIPSPI--GNMRSLEFLRLEENELSGVLPSSMGGLVNLQRVYMSNNMIGGTIPPWWGNLSSLTDLYLNGNRLSGSIPESIGELSKLQDLDLSNNYLSGSLPKELSKLSDLQNLDVSFNNFRFVTVPTVISNLTGLLQLSLAGCGIEGIIPKWLSTMPNGLSTLDLSSNSITGTIPTWVGNMTGLYXXXXXXXXXXXXXPEAMSNLRNLGVLDLHSNHLTGPITAAFSMQSPFPNGLLETVDLSHNKFTGSIPS-SVGNQNGMQQLVLSHNSLRGAIPSTLGSLAQLQTLELN------------------------ENHLSGKIPNAFVNLTSLLQLNVSHNSLSGMIPVGGLLQKFPISSYSGNRGLCGDPLPAC
B9S2F4______________RNDLKGLISFKAGIHVDTSGRLAKWVGRSCCNWVGVTCDNTTGRVTAILLAGFISTDDFILQSEMKGWLSPSITLLSFLEVIDLGGLINLAGTIPPAIGFRLPRLRKLYLYGNKLSGSVPHSIGKLSKLEELHLHENRFSGFLPSSLGNLKNLNQLLLHSNRFTGVIPDSLTNLTNLMQLDLHSNAITGQIPDRIGEMQALEKLDLSNNLLRGKIPISLTGLNAISELYLDTNCLEGAIPFPSSSGQMSSLGFLKLNDNNLTGTIPANFGYLVSLQRVSLANNKLAGVIPSSLGNLSALTELYLNGNLLSGQIPKSISLLSRLILLSISHNFIQGPFPCEFSSLQNLQTLDLSFNHLDLVSFPKCLAEMPSLSRIYLAGCGIHGEIPAFLQTTPSPIQELDLSTNHLTGSLPPWLGSLTQLYSLNLSRNFLVSSIPDSVTNLQHLGVLDLHSNKITGPISKIFEICSAFSDGSLTYIDLSDNIFSGGIQQIGVGGQVGIQYLNLSRNILEGEVPTSIGRMKSLQTLDLSCNKFGFTLPEALANVSSLERLKLQKNHFTGKIPVGFLKLRKLKELNLSDNLLVGEIPIGKPLSEFPWTSFSGNKGLCGKPLTPC

SNPs (tot: 105)

Position	A %	C %	G %	T %	Probability
181			16	83	0.994512
182	83			16	0.994512
184	83		16		0.994512
189		16	83		0.994512
191	83			16	0.994512
192			83	16	0.994512
193	83		16		0.994512
195		16	83		0.994512
196	83			16	0.994512
198	83			16	0.994512
211		11	88		0.923564
212		88	11		0.923564
215	11	88			0.923564
216		11	88		0.923564
220		88	11		0.923564
221	88	11			0.923564
222	88			11	0.923564
224			88	11	0.923564
227			88	11	0.923564
228		11	88		0.923564
613	50		50		1.0
640	62		37		1.0
686	62	37			1.0
692		62		37	1.0
693	62		37		1.0
743		62		37	1.0
746	62	25			1.0
751			57	42	1.0
754		28	71		1.0
758	71	28			1.0
773			71	28	1.0
776	57		42		1.0
786		42		57	1.0
788		28		71	1.0
797	42		57		1.0
817			50	50	1.0
867	60	40			1.0
887		40		60	1.0
889	40			60	1.0
899		60		40	1.0
902	20	80			0.995493
905		60		40	1.0
912		40		60	1.0
920		60	40		1.0
929	60		40		1.0
937			60	40	1.0
974			60	40	1.0
1037		60		40	1.0
1038	60		40		1.0
1044		50		50	1.0
1053			50	50	1.0
1056		50		50	1.0
1057		50		50	1.0
1097	28	71			1.0
1125	20		80		0.995493
1126	80		20		0.995493
1136	80	20			0.995493
1140	20	80			0.995493
1155			80	20	0.995493
1156	80			20	0.995493
1170	80	20			0.995493
1475	75	12	12		0.975346
1476	87		12		0.992554
1480		87	12		0.992554
1482	87			12	0.992554
1483		87	12		0.992554
1484	12			87	0.992554
1486	12			87	0.992554
1487			12	87	0.992554
1495	12	75		12	0.975346
1496	12	12	75		0.975346
1498		12		87	0.992554
1500	87	12			0.992554
1523	23			76	1.0
1530	16	83			0.999991
1544	20	80			0.999996
1564		80		20	0.999996
1587		11		88	0.923564
1594	22	77			0.999999
1608	66			33	1.0
1610			77	22	0.999999
1624	22		66	11	0.999999
1625		88		11	0.923564
1633		10		90	0.90298
1634	10	70		20	0.999998
1643	84	15			0.999986
1694	69		30		1.0
1697		84	15		0.999986
1704		84		15	0.999986
1731		11	88		0.923564
1732	11		88		0.923564
1740		37	62		1.0
1760	12		87		0.992554
1794	83		16		0.994512
1846		83		16	0.994512
1872		16	83		0.994512
1874			83	16	0.994512
1879		16		83	0.994512
1881		83		16	0.994512
1882	83		16		0.994512
1884	80	20			0.995493
1885	80			20	0.995493
1888		25		75	0.996473
1889	25			75	0.996473
2188			40	60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain