SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5487

Length: 1569 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5487

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pentatricopeptide repeat-containing protein, putative	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	pentatricopeptide repeat-containing	-	-	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	0.0	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1K1

Fln msg:

Fln protein: MMPIHRIFLRKSTSALRFFSQKSTPNTMFSIFSSQRSNKSPTFSQKLISDYSAFLPFSLQSMRLSTASGEELREKQATDESMNGAKKIGNENSVAINSSGDQSASDGDSNSPEDADQIFQKMKETGLVPNAVAMLDGLSKDGLVQEAMKLFGEMREKGNIPEVVIYTAVVEGFCRAKKLDDAKRIFKKMKDNGVVPNAFSYCILIQGLCKDKKLEEAVDYSLEMLDQGWRPNVATFVSIIDGFCKELRSDEAKGVINQFKEKGFIVDEKAVREYMDKKGPFFPSVWEAIFGKRAARGTI*

Protein Length: 301

Fln nts: ATGGGGGGTTCGCAAATGGGTAATCCACACAAGCCCCTGGGTCTGGGAGCCTGCTTAAACCCTAATAAACCCTCCGCAGAAGCACGCTAGACTTCACTCATCGCTGGTGCTACCGGTGCTCGAACC_-_ATGATGCCGATACATCGAATTTTCCTGCGTAAATCAACCTCTGCTCTACGATTCTTTTCACAAAAATCCACTCCCAACACTATGTTCTCCATTTTTTCCTCCCAACGATCAAACAAGTCGCCCACATTTTCCCAGAAGTTAATCTCGGATTATTCAGCCTTTCTTCCATTTTCTCTGCAGTCCATGCGTCTCAGCACAGCCTCGGGTGAGGAATTGCGAGAGAAACAAGCCACAGATGAATCCATGAACGGAGCAAAAAAGATAGGCAATGAGAATTCGGTCGCGATTAACTCCTCTGGCGACCAAAGCGCCTCAGACGGCGACTCGAATTCACCCGAAGACGCGGATCAAATATTCCAGAAGATGAAAGAAACAGGCCTGGTTCCCAACGCCGTTGCCATGCTGGATGGCCTCTCCAAGGACGGGCTGGTGCAGGAGGCCATGAAGTTATTCGGTGAAATGCGGGAGAAAGGGAACATACCCGAAGTTGTGATCTACACGGCCGTCGTCGAAGGGTTTTGCAGGGCAAAGAAGCTTGATGACGCCAAGAGAATATTCAAGAAAATGAAGGACAATGGCGTCGTGCCGAATGCTTTCAGCTATTGCATATTGATTCAGGGTTTATGCAAAGACAAAAAGCTGGAGGAAGCCGTCGATTACAGTCTCGAAATGCTTGACCAAGGTTGGCGCCCTAACGTTGCCACTTTTGTTTCGATCATCGACGGTTTCTGCAAGGAACTAAGATCAGATGAGGCCAAGGGGGTTATCAATCAGTTCAAGGAAAAGGGTTTCATTGTAGACGAGAAGGCTGTTCGGGAGTATATGGATAAGAAGGGACCCTTTTTCCCGTCTGTTTGGGAAGCTATATTTGGGAAGAGAGCAGCGCGTGGCACAATATAG___GGTTTCAAAATGGGTTCCTGAAATGAAATAGGATCCCTGAGGTTTTAATTGATCCCTGGGAGGAAGATACCTGATGGACTTGATACTGTACTTTTAATTTTTTTGGGTGTCGGTCAGCCTGTGTTGTTATTTCGCTATATGTTTAGCTGTTCTGGTATCTGGGTACGCAGCTGCTCCATTTCAGGTTTACCTACAGCATCGCAATGCCCCTTTAGGGAGAAAGTTAAAGTAAGATTATTCGAGCGTTGTAGGCTTGATTTGTGGAGTTTCTTTTTTCTTTTTGGTCTTGAATTTACATCTTGTATTTAATATTGAATGTTGGATTTTATCTTGGTTGCATCGACTGTCAATATTTATCCATTTGAATTTTGCACGTGGTCCTTGTCTTGAAGAACATTCAAAGAATGCCTGTTCAGAGTTCAGGTAAAGTGCTTTATCCATTTGAATATTGCACGTGGTCCTTGTCCTTAAGAACATTTAAAGAATTCCTGTTGAGAGTTCAGGTAAAGTGTTTGGGTATATGAAGTCAGAAACAATGAGGGT

Fln Alignment:

sp_v1.1_unigene5487___MPIHRIFLRKSTSALRFFSQKSTPNTMFSIFSSQRSNKSPTFSQKLISDYSAFLPFSLQSMRLSTASGEELREKQATDESMNGAKKIGNENSVAIXXXXXXXXXXXXXXXPEDADQIFQKMKETGLVPNAVAMLDGLSKDGLVQEAMKLFGEMREKGNIPEVVIYTAVVEGFCRAKKLDDAKRIFKKMKDNGVVPNAFSYCILIQGLCKDKKLEEAVDYSLEMLDQGWRPNVATFVSIIDGFCKELRSDEAKGVINQFKEKGFIVDEKAVREYMDKKGPFFPSVWEAIFGKRAARGTI
A9P1K1______________MPIHRICLRKSTSALRFFSQKSTPNIMFSIFSSQGLNKSPTFSQKLFSDRSAFLPFSLHSMHISTPSGDELREKQAADVSLNGENKIGDENLGGNNSVGDRNAPDGDSNSPEDADQIFQKMKETGLVPNAVAMLDGLSKDGLVQEAMKLFGEMREKGNIPEVIVYTAVVEGFCRAKKLDDAKRIFKKMKDNGVVPNAFSYCVLIQGLCKDKKLEEAVDYSLEMLDQGWRPNVATFVSIIDGFCKELRSDEAKAVINQFKEKGFIVDEKAVREYMDKKGPFFPSVWEVMFGKRAARGTI

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
93		33		66	1.0
94			33	66	1.0
95			33	66	0.997452
96		66	33		0.997452
133			33	66	1.0
215		33		66	0.997452
469		75		25	1.0
471		87		12	0.992554
472		12	87		0.992554
473	12		87		0.992554
474	87	12			0.992554
487			75	25	1.0
506		88	11		0.923564
508		11	88		0.923564
511			11	88	0.923564
512	11	88			0.923564
515	88			11	0.923564
516	88			11	0.923564
517		88	11		0.923564
520		88		11	0.923564
523		11		88	0.923564
524	11		88		0.923564
532		10	90		0.90298
538	10	90			0.90298
543		90		10	0.90298
544		90	10		0.90298
545	90		10		0.90298
546	90	10			0.90298
547			90	10	0.90298
549	90			10	0.90298
551	10		90		0.90298
552		10	90		0.90298
553			90	10	0.90298
555	10			90	0.90298
580		88		11	0.923564
733		77		22	0.999999
945	85	14			1.0
949		14		85	1.0
950	85		14		1.0
953		14	85		1.0
954	85	14			1.0
956	85			14	1.0
957	81	4	13		1.0
959	81	13		4	1.0
960	81	4		13	1.0
962			80	19	1.0
963	4	14	80		1.0
967	10	84		5	0.999846
1192	83			16	0.999991
1193		83	16		0.999991
1200	8	25	58		1.0
1345	25		75		0.996473
1369	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain