SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5467

Length: 1687 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5467

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF3353 domain containing protein	-	-	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF3353	IPR021788	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NS20

Fln msg:

Fln protein: MAMVGLSIGVGEAPPKGPICGWGAKGGDARWRVPKRCGIVVCGGGYSRKPGPSWRSVGKENYRGQSGKRALQIHANSKADDSVPSEMSFETALNLLGVAEGASFEEILKAKNSILDRNREDQELAAQVEAAYDMLLMQSFMQRRAGKVVDSSIRFADVKQRGNAGIGSTPEWLKKFLKNTPVTVEPPSANDLGIQTGVYGALMVWTFVSGVSQTTGGQFASTGADVPGLILATGFGASLYFLRKKNMKLGKAAVVTVGSLVAGAVLGGVVESWLQVDIVPLFGIRSPAVVVSEFVLLSQWLSSLYLQ*

Protein Length: 309

Fln nts: ATGGGGGCCCAGAACAATTTCTGAATCGGGTGAAACAGAAAGAAACTTCTGTTTTACCAGAGTTCGACAAAGAGATGACCCGTTGCTATCATGGATAAGTGTAACAAGGGGTGAAAATCGCACCTCGCCTCCCGTGGGGATTTCCATCCCACATAAATTAGCGGTCGTTTGCAAGCGTCCTACGCCAGCCACAATGTACAAATATCCACGGACTTGCCCACATGTTATTCCCCGCTCTCTGAAATCTGGCCAAGCAAGTAATATAACAATAATTGGAGCCTTCTGTGCCATTCAGCACCGTTCCTTTCCTCAGCTGCTTCAAG_-_ATGGCAATGGTGGGTTTGTCGATTGGCGTGGGCGAAGCGCCGCCGAAGGGTCCTATCTGCGGTTGGGGAGCGAAGGGGGGAGATGCTCGTTGGAGGGTTCCGAAACGGTGTGGAATAGTGGTTTGTGGAGGAGGGTATTCAAGAAAGCCAGGACCGAGCTGGAGAAGCGTTGGGAAGGAGAATTATAGGGGACAGAGTGGTAAAAGGGCTTTGCAGATACATGCCAATTCTAAGGCAGATGATTCTGTGCCGTCTGAGATGTCTTTTGAGACTGCGTTGAATCTTCTGGGTGTTGCAGAAGGGGCTTCTTTTGAAGAAATCCTTAAGGCGAAGAATTCGATTTTGGATAGGAATAGAGAGGACCAGGAGCTCGCTGCCCAGGTAGAGGCTGCCTATGATATGCTTCTTATGCAAAGCTTTATGCAGCGCAGGGCCGGGAAAGTTGTAGATAGCAGTATTCGGTTTGCTGATGTCAAACAGAGAGGCAATGCTGGTATTGGTAGTACTCCAGAGTGGCTAAAGAAATTTTTGAAGAATACACCAGTTACTGTTGAACCACCATCTGCCAATGATCTGGGTATACAGACTGGGGTTTATGGAGCTCTTATGGTTTGGACATTTGTGAGTGGGGTTTCACAGACAACAGGAGGGCAGTTTGCCAGTACTGGAGCTGATGTACCTGGTCTGATATTAGCTACTGGGTTTGGAGCTTCACTTTACTTTTTACGCAAGAAAAACATGAAACTAGGAAAGGCAGCTGTAGTAACTGTTGGAAGTCTTGTGGCTGGAGCAGTACTTGGAGGAGTAGTGGAATCATGGTTACAGGTAGACATAGTTCCACTATTTGGGATCAGATCACCTGCTGTGGTCGTGAGCGAATTTGTACTTCTCTCTCAATGGCTATCTTCATTGTACCTACAATAG___ACGGGTAACAGGTAGTAAGGTTTCCATAATGAAATGAACCTTGCCAAAACTCATGTATATGTAGAGTAAGCTGGCAGGTGTTGCAACGCTGCACATGATTATTGAAGGTTCATTCTTGAGAATGCTACATTATCTCTTAATAATAAAATTTAAGAGGTTTCAATCTAGGCTTTAAAATGACTCTAGTTGATTTCAATTTCTATCTGTACATACATGTACAATCAGTCACAGTTTCTAGTGTCTTAGAAAAGGGTCATTTGCAATGTATAGCTTGACTCAGTTAATGTACATTTCATTTATTCTGCCAAAGCAGATCAGTTTCAGGTGACAGTTGTAGAAATGATTACAGTGACTCCTCACTTACGAGGAGATTTTTGCTGTGCCACTTCGGTATCTTGTGCAATGAAAGTGTAAAATTATAATATCCACCTATTTTGTTT

Fln Alignment:

sp_v1.1_unigene5467___MAMVGLSIGVGEAPPKGPICGWGAKGGDARWRVPKRCGIVVCGGGYSRKPGPSWRSVGKENYRGQSGKRALQIHANSKADDSVPSEMSFETALNLLGVAEGASFEEILKAKNSILDRNREDQELAAQVEAAYDMLLMQSFMQRRAGKVVDSSIRFADVKQRGNAGIGSTPEWLKKFLKNTPVTVEPPSANDLGIQTGVYGALMVWTFVSGVSQTTGGQFASTGADVPGLILATGFGASLYFLRKKNMKLGKXXXXXXXXXXXXXXXXXXXESWLQVDIVPLFGIRSPAVVVSEFV
A9NS20______________MAMVGLSIGVAEAPPKVSICGQGAERGDARWKSLKRCRIVVCGGGYSRKPRPSWRSVRKENYWGHSGKRALQIHANSKADDSVPFEMSFENALKLLGVAEGASFEEILRAKNSILDRNREDQELAAQVEAAYDMLLMQSFMQRRAGKVVDSSIRFADVKQRGNSGIGSTPEWLKKFLKNTRVTVEPPSANDLGIQTGVYGALMVWTFVSGVSQTAGGQLPSTGADVPGLILATGFGASLYFLRKKNMKLGKAAAVTVGGLVAGAVLGGVVESWLQVDIVPLFGIRSPAVVVSEFV

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
338	25		75		0.996473
340		25	25	50	0.995533
341			25	75	0.996473
388	16			83	0.994512
389			83	16	0.994512
401	16		83		0.994512
492	10	90			0.90298
496	10		90		0.90298
501	10		90		0.90298
717	18	81			0.999994
844	88			11	0.923564
845	88	11			0.923564
847	88	11			0.923564
849	88		11		0.923564
851			11	88	0.923564
852	11			88	0.923564
853			11	88	0.923564
859	87		12		0.992554
860	87	12			0.992554
861		12		87	0.992554
1002	50		50		1.0
1081	80		20		0.995493
1126	80			20	0.995493
1160			60	40	1.0
1192		16	83		0.994512
1200		16	83		0.994512
1201		66		33	1.0
1202			83	16	0.994512
1203	83			16	0.994512
1204	83		16		0.994512
1205			16	83	0.994512
1206		16		83	0.994512
1213	16			83	0.994512
1215		16		83	0.994512
1272			50	50	1.0
1279		14		85	0.993533
1281	83			16	0.994512
1282	83	16			0.994512
1283	83		16		0.994512
1294		83		16	0.994512
1295	83		16		0.994512
1296	83			16	0.994512
1297	83	16			0.994512
1359		16		83	0.994512
1451	60		40		1.0
1461			10	90	0.90298
1462	90		10		0.90298
1615		66		33	1.0
1643			60	40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain