SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5452

Length: 400 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene5452
TTATTAGGAAGGCACGGGCGTATAAACAAACTAGCAACTCTGAAGATCCGAGACCACCCTTTAATGGAAGAGTAGTAAATACGAAGAGTAAGCTTATGACTGGCATTTCAGACTGCATTGAGAACCCATTCATGTATTCTATTGAAGATCTCCAGGTAGCCACTCAGAATTTCAGCCCTTCGTGTAATATAGAGGGCTCTGTTTACAAAGGTACTCTAGATGGTAGGGATTATGCTATAAAGCTCATGAAAGGAGATATATCCCAAGAGTTGAAGATATTGCAGAAGGTCAACCACACTAATTTGGTTAAGCTAGAGGGATTTTGTATCAGTTCAGAGGGCCAGTCTTACTTGGTTTATGAGTATGTAGAAAATAGTTCTTTGAATACCTGGCTTCATGA

Ace file of the UniGene sp_v1.1_unigene5452 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9RTG0_RICCO	-	-	2.0e-28	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	domain containing receptor-like kinase	-	-	0.0	65%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	65%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	65%
Blast2go	Protein kinase-like domain	IPR011009	-	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ73

Fln msg: Distance to subject end: 222 aas, your sequence is shorter than subject: 132 - 536

Fln protein: IRKARAYKQTSNSEDPRPPFNGRVVNTKSKLMTGISDCIENPFMYSIEDLQVATQNFSPSCNIEGSVYKGTLDGRDYAIKLMKGDISQELKILQKVNHTNLVKLEGFCISSEGQSYLVYEYVENSSLNTWLH

Protein Length: 133

Fln nts: TTATTAGGAAGGCACGGGCGTATAAACAAACTAGCAACTCTGAAGATCCGAGACCACCCTTTAATGGAAGAGTAGTAAATACGAAGAGTAAGCTTATGACTGGCATTTCAGACTGCATTGAGAACCCATTCATGTATTCTATTGAAGATCTCCAGGTAGCCACTCAGAATTTCAGCCCTTCGTGTAATATAGAGGGCTCTGTTTACAAAGGTACTCTAGATGGTAGGGATTATGCTATAAAGCTCATGAAAGGAGATATATCCCAAGAGTTGAAGATATTGCAGAAGGTCAACCACACTAATTTGGTTAAGCTAGAGGGATTTTGTATCAGTTCAGAGGGCCAGTCTTACTTGGTTTATGAGTATGTAGAAAATAGTTCTTTGAATACCTGGCTTCATGA

Fln Alignment:

sp_v1.1_unigene5452___IRKARAYKQTSNSEDPRPPFNGRVVNTKSKLMTGISDCIENPFMYSIEDLQVATQNFSPSCNIEGSVYKGTLDGRDYAIKLMKGDISQELKILQKVNHTNLVKLEGFCISSEGQSYLVYEYVENSSLNTWLH
B8LQ73______________IRKRRSYKQTSISEDQRPPSDVGVGKTKSKLMTGISDCVENPFMYSIEDLDKATQNFSPLCNIEGSVYKGTLDGRDYAIKLMKGDISQELKILQKVNHTNLVKLEGVCISSEGQSYLVYEYIENSSLNTWLH

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
220	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain