SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5438

Length: 1352 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5438

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	C2 domain containing protein	-	-	9.0e-11	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%
Blast2go	protein	-	-	0.0	81%

Source	InterPros	Term	Type	Identity
Blast2go	C2 calcium-dependent membrane targeting	IPR000008	-	81%
Blast2go	C2 calcium/lipid-binding domain, CaLB	IPR008973	-	81%
Blast2go	Armadillo-like helical	IPR011989	-	81%
Blast2go	Armadillo-type fold	IPR016024	-	81%
Blast2go	C2 membrane targeting protein	IPR018029	-	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRA0

Fln msg: your sequence is shorter than subject: 306 - 536

Fln protein: NLVTHSRTNRRAVAEAGGIQVVQELLSSPSSEISGQAALLMKLLFSSHVLKEYVSVETIHALTGALGKELWAKGTVSDDVVKAISVIFSNFSRLRGTEVATLCIPHLVGALKAGTEPAQEASLDALCLLKHSWAANPADVGKAQAMAAAEAIPILQLIIRDGPPRFHEKAESLLQCLPGTLVVTINRGNNLKQTLGSTNAFCKLTFGNGPPRETKVVSQNISPEWKQEFAWAFDMPPKGQKLHISCKSKNAFGKVALGKVTIQIDRVVMLGTISGQYTLVPDSNRDGTQRTLEIEFHWSNRRLNI*

Protein Length: 307

Fln nts: AGAATTTAGTTACACATAGTAGAACAAATAGGCGTGCTGTTGCAGAGGCAGGTGGTATACAGGTTGTGCAAGAGCTTCTCAGTTCACCAAGTTCAGAGATATCTGGACAAGCAGCATTGTTGATGAAGCTTCTATTCTCTAGTCACGTTCTTAAAGAATATGTTTCCGTTGAAACCATACATGCTTTGACTGGGGCATTGGGAAAGGAACTTTGGGCAAAGGGAACTGTCAGTGATGATGTTGTCAAGGCTATTAGTGTTATCTTCAGTAATTTTTCAAGACTTCGTGGAACAGAAGTGGCCACTCTTTGCATCCCACATTTAGTTGGTGCTCTGAAGGCTGGAACAGAGCCAGCTCAAGAGGCTTCTCTAGATGCACTATGTTTGTTAAAGCATTCGTGGGCAGCTAATCCTGCTGATGTTGGCAAAGCACAAGCCATGGCTGCAGCAGAGGCCATTCCCATCTTACAACTGATAATAAGGGATGGTCCCCCTCGTTTCCATGAGAAGGCTGAAAGTTTGTTGCAATGTTTACCAGGAACCTTGGTTGTCACTATAAATAGAGGCAATAACTTGAAGCAGACTTTGGGAAGTACCAATGCATTCTGTAAATTGACATTTGGGAACGGTCCTCCTCGAGAAACCAAAGTAGTATCTCAAAACATTTCCCCAGAATGGAAGCAAGAATTTGCTTGGGCATTTGATATGCCTCCAAAGGGTCAAAAACTTCACATTTCTTGCAAGAGCAAGAATGCCTTCGGAAAAGTTGCTCTGGGGAAAGTGACTATTCAAATAGATAGAGTAGTAATGCTTGGAACAATCAGTGGCCAGTATACTCTCGTCCCTGATAGTAACCGCGATGGTACACAACGAACACTTGAAATAGAATTTCACTGGTCCAATAGGCGATTAAATATTTAA___AATTTGGCCAAGATTTTGATGTCCTGCATGTTGCCAAAGGTTGCATATGCAATGGATTTACTCTGTCTGGAGTGCGGAGAAGTGGTGAATGTGCTTTTTGAAGTGAGAAATAAAATAATCTTTAGCATTCATAATGCAGGACTGTAGAGCATCATCTTTCATAAATTGACCACTCTTGTCTTCAGACAGGTTCCATCCAATGGTTGAATTCTCATTTTGAGAAGCATCGATTTTTCTTTGGATAGAGTTTTGTCTATAAGGATATTAAGGTATCCTTCTTAATTTATCAATTGTCACCCATTGGAAGCCACTCTTGTACAAAGTCATGATGGAAAAACACTTTATATTCTCACTTGAGTGGCAAGCTGTAGCTGTTTAAAGTTCATTGATATTTGGCATGGTTTCAATTTTAATTCAATTACATATCCCAGG

Fln Alignment:

sp_v1.1_unigene5438___EKAESLLQCLPGTLVVTINRGNNLKQTLGSTNAFCKLTFGNGPPRETKVVSQNISPEWKQEFAWAFDMPPKGQKLHISCKSKNA----FGKVALGKVTIQIDRVVMLGTISGQYTLVPDSNRDGTQRTLEIEFHW
B8LRA0______________EKAPEGTPAGGGLLVVRVLEAEDVEGK-HHTNPYVRLLF-KGEEKKTKPVKKNRDPRWDQEFEFMLEDPPVNDKIHVEVMSKGSSLALHSRESLGYVDINLSDVVNNKRINEKYHLI-----DSKNGKLQLELLW

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
780	80		20		0.995493
1147	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain