SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5435

Length: 1649 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5435

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	atpcd1; ATP synthase, subunit D, chloroplast precursor; K02113 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14]	-	-	2.0e-35	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	protein	-	-	0.0	71%

Source	ECs	Term	Type	e value	Identity
AutoFact	H(+)-transporting two-sector ATPase.	EC:3.6.3.14	-	2.0e-35	49%

Source	KEGGs	Term	e value	Identity
AutoFact	Oxidative phosphorylation	00190	2.0e-35	49%
AutoFact	Photosynthesis	00195	2.0e-35	49%
AutoFact	Methane metabolism	00680	2.0e-35	49%
AutoFact	Metabolic pathways	01100	2.0e-35	49%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	71%
Blast2go	photosynthetic electron transport in photosystem I	GO:0009773	Biological Process	71%
Blast2go	response to cold	GO:0009409	Biological Process	71%
Blast2go	photosynthetic electron transport in photosystem II	GO:0009772	Biological Process	71%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	71%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	71%
Blast2go	plastoglobule	GO:0010287	Cellular Component	71%
Blast2go	stromule	GO:0010319	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ATPase, F1 complex, OSCP/delta subunit	IPR000711	-	0.0	71%
Blast2go	ATPase, F1 complex, OSCP/delta subunit, conserved site	IPR020781	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7U9

Fln msg:

Fln protein: MDTLTQSLGSLNVHSRSSAQALQPREPVQRLPVTNLSPKSHYSRLFAPAHLTISKPGIGSATRNSYSLDALASRIPHANAKSPVRRAVVVTRDSAAGGYAAALLQFAQANNMLEVINGDMERLSHLLKNQELYDFLINPITENGKKKSILKSIADDAKFQNYTLNFLNLLISKQKIGIVKNILKEFESLYNELTDTQVAFVSSALKLEKHQLAQIAKKIQSLTGAKNVKLKSIIDSSLIAGFVIRFGKDASRIIDMSVRSRLERLSTSINST*

Protein Length: 274

Fln nts: ATGGGAGGGCATTATATACCGCGCGATACGCTTTTCATCTTTCCGGACCATCCGATATCTTCTCCCTGGTAAGATTTTGAGTATGTGGTTCACATTCTTTGGCCAAACCATCTCTGAGGTTGCCACGTTGTAAGAAACTCCAAGTGATTGGGAGAGGAGGTTGTTTGGAGATTATATGCGATATGCTTTTCAGCATTGCAGGCCACCCTATTTGTTCTCTACGGTACGATTTTGGCCGTCTGGTTCGTATATTCCTAGGCGTATAATGCAGTTGTAGTGGCATTATTGCATAAACGTCAGATTGATCAAAATTTCATTGCCAGGAAACTTTCTGCTGAGATTGTCCAG_-_ATGGATACATTAACGCAATCCCTCGGTTCCTTGAATGTGCATTCAAGATCATCTGCACAAGCGCTTCAGCCTCGGGAACCTGTTCAACGGCTTCCTGTCACCAATTTATCACCAAAATCACATTACTCCAGGTTATTTGCACCTGCTCACTTGACTATTTCAAAACCAGGGATTGGAAGTGCAACCAGAAACTCTTATTCACTTGATGCTTTGGCTTCAAGAATCCCACATGCAAATGCAAAAAGTCCTGTACGACGGGCTGTTGTTGTGACGCGTGATTCTGCAGCGGGTGGATATGCGGCAGCTCTTTTGCAATTTGCACAGGCAAATAACATGTTAGAGGTGATTAATGGGGATATGGAAAGACTTTCTCATTTGTTGAAGAACCAGGAACTCTATGATTTTCTCATCAATCCTATTACTGAAAATGGGAAGAAGAAGAGCATTCTCAAGTCTATTGCAGATGATGCTAAGTTTCAAAACTATACTCTGAATTTCCTGAATCTTCTTATCAGTAAGCAAAAGATTGGCATAGTAAAGAATATCTTGAAAGAATTTGAATCATTATACAATGAACTGACAGATACCCAGGTTGCTTTTGTATCCTCTGCATTGAAGCTCGAGAAACACCAGTTAGCGCAGATTGCAAAGAAAATACAGAGCTTAACTGGGGCAAAAAATGTAAAACTCAAGAGCATTATTGACTCCTCTTTAATAGCAGGCTTTGTCATCCGCTTTGGCAAGGATGCATCCCGCATCATAGATATGAGTGTGAGAAGCCGATTGGAGCGCTTATCAACTTCAATTAATTCTACATAA___AATGTTGTAGCGTTTGAAATCTGAATTAACGAACCCAATTCCTTCCATGCCAGGGATTACTCTGCAGTGCGAAATTGTTTGTTCCTAAAGTGCTTCTGTTCTAGGATTGACATTTTTTTCTCCATTTCCAATGTACACATAGACTGTATTTTATAACAAAGTATTGATATTAGGAGGCATTTCGTGAAAGCTAAGGTTTTAGTTGGGTTACGTTCGATGAAAAGATGGAGTACAGATATTGAACATTTGGAATGGATATGCTCATTTTTGGGGGGAGCTAGAGATAATTACTGTGATTTCTAGTTGAAAATGACGCCTACAAGCACTGTTTATTTTGTGGACTTGTTCAAGCTCAAGGATCTGTATAAGTTTCGGGCCACTTCTCATGTGTATTTTAAGGGCTTGCTGTTATTTAACAAGATAATTTGCTGGCTTTTGCGTGCTTGCTGTTATTTAACAAGATAATTTGCTGGCTTTTGCGA

Fln Alignment:

sp_v1.1_unigene5435___MDTLTQSLGSLNVHSRSSAQALQPREPVQRLPVTNLSPKSHYSRLFAPAHLTISKPGIGSATRNSYSLDALASRIPHANAKSPVRRAVVVTRDSXXXXXXXXXXXXXXXNNMLEVINGDMERLSHLLKNQELYDFLINPITENGKKKSILKSIADDAKFQNYTLNFLNLLISKQKIGIVKNILKEFESLYNELTDTQVAFVSSALKLEKHQLAQIAKKIQSLTGAKNVKLKSIIDSSLIAGFVIRFGKDASRIIDMSVRSRLERLSTSINST*NVVAFEI
D5A7U9______________MDTLTQSLATLNVHSRPPAQVLQSREPVQLLPAAILSPRSRSSRPFAPAHLTISKKGIEAAFKNSYTLDALASRIPQANAESPVRRAVVVMRESAAGGYAAALLQFAQANNMLEMINGDMEKLSHLLKNRELYDFLINPITENGKKKSILKSIADDAKFQTYTLNFLNLLISKQKIGIVNNILKEFESLYNELTDTQVAFVSSALKLENRELAQIAKKIQSLTGARNVKLKCIIDSSLIAGFVIRFGKDASRIIDMSVKSRLELLSAPINSTEKVGAFGI

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
40		66	33		0.997452
41			33	66	0.997452
42			33	66	0.997452
43			33	66	0.997452
68		25		75	0.996473
111	75		25		0.996473
127		83	16		0.994512
129			16	83	0.994512
130			16	83	0.994512
134	50			50	1.0
204		83	16		0.994512
313		16		83	0.994512
466	85		14		0.993533
480	14		85		0.993533
648		90		10	0.90298
878			85	14	0.999981
1282	14			85	0.993533
1284	14			85	0.993533
1339		14		85	0.993533
1375	16		83		0.994512
1378	83		16		0.994512
1412		83		16	0.994512
1430	16			83	0.994512
1468		66	33		0.997452
1479		25		75	0.996473
1496			75	25	0.996473
1502	50			50	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain