SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5434

Length: 1832 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5434

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PRCC_Cterm multi-domain protein	-	-	9.0e-09	50%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	37%
Blast2go	protein	-	-	1.4013e-45	56%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Mitotic checkpoint protein PRCC, C-terminal	IPR018800	-	1.4013e-45	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9SNY8

Fln msg: your sequence is longer than subject: 411 - 363

Fln protein: MDSLFANYASASDSEEEEKGTEVNFTALPPPKNNNSSLPKGEYNCSSASSIFTALPPPKNNNTSLPKGGSNSSSSSSIFTALPPPKNNNSYLSSPSPSLKPQQDDVPKASSSSLFSSLLPVKSRSGFSLPPPKNKSGKRVVEFKPPLNPALLEKPDDEEKNERASKKRATSGDSEAPAGGLTALLPPPKNDNILGAGGAHTGRRFFLDTAPSTHQSPSTIDTDTREEPSLDVHHAVHSYNDGAITPSQNDYYYPAVPPSQGADFGYSGKAAWSYGNHQPQPRPPQEAAYVELKEPMEDAQQVWEGTGSSFGKADEKKRGRNQIPSNVIEVKQDELISNRPREDQAKLTGIAFGPSYQPVSSGKDKPTKLHKRKHQIGSLYFDLKQREMELAERRAKGQLTKAETQAKYGW*

Protein Length: 412

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGTTCCAAATGACACGACGAATGGGTAGATATGGAGTCTAGCTTTGCTCTTTGAATATGTATAATATATCTCTGCAACAAAGACAGAATTATGAAAGCGAACCCATGCACAACGGTTGCAACTCTGCGGTGGACTCTAAAACTGCAATACCATTCCAGAGCTCCCTATATTTAATACCACGGTTAGTATTAACAATCCCAGTATTGCGTGTTCTCTCGTAGCTTCGATGTTTTCCCCTATTCTGTCTGTACTCTTTTAATATAAAGAGTTATTAAAGAGGTGTTCCGCC_-_ATGGATTCTCTCTTTGCCAACTATGCGTCGGCCTCAGATTCAGAAGAGGAGGAGAAAGGCACAGAAGTCAATTTCACCGCTCTTCCCCCGCCCAAGAACAATAATTCATCTCTTCCCAAAGGTGAATACAATTGTTCTTCAGCTTCCTCGATTTTCACCGCGCTTCCTCCCCCCAAGAACAATAATACATCTCTACCCAAAGGGGGATCTAATTCTTCTTCTTCTTCGTCGATTTTCACCGCTCTTCCTCCGCCCAAAAACAATAATTCATACTTATCCTCTCCCTCGCCTTCCTTGAAACCCCAGCAGGATGACGTCCCAAAGGCTTCTTCTTCATCGTTATTTAGTAGTTTGCTTCCAGTGAAGTCGAGATCTGGTTTCTCCTTGCCGCCACCGAAGAACAAATCCGGCAAGCGGGTCGTGGAATTCAAGCCTCCTCTGAACCCTGCGCTGCTTGAAAAGCCGGATGATGAAGAAAAAAACGAAAGGGCCAGTAAGAAAAGGGCAACCTCAGGTGATTCTGAAGCCCCAGCGGGTGGGCTGACGGCCCTATTGCCACCCCCCAAGAACGACAACATCCTCGGGGCGGGCGGCGCTCACACTGGGCGCCGCTTCTTTCTGGACACTGCGCCTTCCACGCACCAATCGCCATCTACTATCGATACTGACACTAGGGAAGAGCCTTCTCTTGATGTTCATCATGCCGTCCACTCCTATAATGACGGGGCGATAACTCCATCGCAAAATGATTATTACTATCCCGCCGTTCCACCATCTCAAGGAGCAGATTTTGGCTACTCCGGCAAGGCAGCATGGTCATATGGAAATCATCAACCTCAACCTCGCCCCCCTCAAGAAGCTGCATATGTCGAACTTAAGGAGCCTATGGAAGATGCGCAGCAGGTTTGGGAGGGCACCGGTTCGAGTTTTGGTAAGGCTGATGAGAAGAAACGGGGAAGGAATCAGATACCTTCCAATGTTATCGAAGTTAAACAGGATGAATTGATCAGCAATAGGCCTCGAGAGGATCAAGCCAAATTGACGGGCATTGCATTTGGACCTTCATATCAGCCTGTTTCATCAGGCAAAGATAAGCCTACAAAGCTGCACAAGAGAAAGCATCAAATTGGCTCATTGTATTTTGATTTGAAGCAAAGGGAGATGGAACTTGCAGAGAGGCGTGCCAAAGGTCAACTCACCAAGGCGGAGACACAGGCAAAGTACGGTTGGTGA___AGGCAGATGATTGATTGTAAGCAATCAACAACCACCTTGTAATAAACTATAGTGACATATCTGAAGATTGTATGCTTGTTTTATCTTTAAATTGCTGCCAATGGTCTGATGTTTTTTCTTCATTTATTCATTAACATTTTCTGATCATTAGAGAAGGAAAGAAACAATTTTATTTCCTGCTGCAGTAACTCATCATGTTGTTGGTTGCTACACTCATTGCTGGATACAACAAGCTTATATCCTATTTTAGTACCATTGTAATGGGATTTAGCTTCAACATTCTA

Fln Alignment:

sp_v1.1_unigene5434___MDSLFANYASASDSEEEEKGTEVNFTAXXXXXXXXXXXXXGEYNCSSASSIFTALPPPKNNNTSLPKGGXXXXXXXXIFTAXXXXXXXXXXXXXXXXXXXXQQDDVPKAXXXXXXXXXXPVKSRSGFSLPPPKNKSGKRVVEFKPPLNPALLEKPDDEEKN---ERASKKRATSGDSEXXXXXXXXXXXXXKNDNILGA--GGAHTGRRFFLDTAPS-THQSPSTIDTDTREEPSLDVHHAVHSY-------NDGAITPSQNDYYYPAVPPSQGADFGYSGKAAWSYGNHQPQPRPPQEAAYVELKEPMEDAQQVWEGTGSSFGKADEKKRGRNQIPSNVIEVKQDELISNRPREDQAKLTGIAFGPSYQPVSSGKDKPTKLHKRKHQIGSLYFDLKQREMELAERRAKGQLTKAETQAKYGW
B9SNY8______________MDTLLVNYAS-SDEEEEEK-QENNLQSSLSSSKPIS-------SSSSYSSLFSSLPNPKPKSKSKAIIGEDEDNPKPSFFS-----------------------SVPKP------------KTQSQQNPISDFSKPSKRVVQFKPPVNPNYDYEEDEDEKEKEMERKQHKEFESMPQSSSVKSFLSSIPAPKNSSNFGALPSAAGSGRKSIIGIEKEPVKSSPGTDDDQNMGNNEPVCHQNDENYGGYQLGINDDNMGQNVVDVSYE----SYGSYENYGDYYHGQYGNNL-EDGSSAETAMPEITWPSEGANLRVPG----------RKRGRNEIPTEIIEVKQDELTKNRPREDQVKLTGIAFGPSYQPAST-KGKPSKLHKRKHQISSLYFDMKQKEMELAERRAKGFLTKAQTHAKYGW

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1192		85		14	0.993533
1194			14	85	0.993533
1195	85		14		0.993533
1196	85		14		0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
528	542	TTC TTC TTC TTC TTC	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain