SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5433

Length: 1128 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5433

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NADH-ubiquinone oxidoreductase subunit B17.2, putative n=1 Tax=Ricinus communis RepID=B9S202_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	nadh-ubiquinone oxidoreductase subunit	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	83%
Blast2go	respiratory chain complex I	GO:0045271	Cellular Component	83%
Blast2go	mitochondrion	GO:0005739	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NADH:ubiquinone oxidoreductase, 17.2kDa subunit	IPR007763	-	0.0	83%

Full-Lengther Next Prediction

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
9	83	16			0.994512
10		16		83	0.994512
13	83		16		0.994512
14			16	83	0.994512
16		83		16	0.994512
17	83		16		0.994512
19		16		83	0.994512
23	83	16			0.994512
25		16		83	0.994512
26	16			83	0.994512
233	80	20			0.995493
234	80		20		0.995493
235	80			20	0.995493
236		20	80		0.995493
239		80	20		0.995493
241	80	20			0.995493
242	80	20			0.995493
246		75	25		0.996473
251	75	25			0.996473
254		25		75	0.996473
257	25			50	0.995533
260		75		25	0.996473
284		25	75		0.996473
649	89		10		0.999937
653		88		11	0.999952
654	83			11	0.999919
663		10	85	5	0.999846
922		63	33		1.0
930	69			30	1.0
935			76	23	1.0
1003			81	18	0.999994
1029			60	40	1.0
1079	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain