SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5430

Length: 2400 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene5430
ATGGGAACATGTGCAGGAGCCAGCTGCATAAACGCACAGAGAGATACGATGCAAATGCAGAGAGATACGACGCAAATGCAGCTCATATGTGGATAATAAAGCGCTAGAGATTTTTAATTGAGCTCAACAACAGGCGGCTCCAAGGAGGTCGCGTGTTCGACAATTTCCTTTGCCTGAGGTCGTGTGTTCGACTCTCCGGAACGGCGAAACCTGTTAATTCCGTGTCTTATGCGTTTGCCAGATGATGGATCCTCGTTTACTATTTCCTGGCGTTGCTGTAGTGTTCCTGCTTTTACTCTTCTCGCAGGGTGGACTGTGCGGCGACATTGTTCATGATGACAAATCGCCTAAGCAGCCTGGCTGTGAAAACAAATTCGTACTGGTGAAAATTCAGACATGGATAAATGGCAGGGAGGGGAAGAATATGTTGGAGTTGGTGCTCGGTTTGGTACGCCTGTGGTATCAAAGGAGAAAGCTGCGAACAAGTCTCGTCTTGTCCTAGCTGACCCCTATGATAGCTGCACCACCCTAAGAGAAAAGCTTACCGGAGAGGCTGTTTTGGTGCATCGAGGCAATTGCACTTTCACAACAAAGGCCAAGTTTGTACAGGCAGCTGGTGCTGTAGCTATTCTTGTTATAAATGACAGAGAAGAGCTTTATAAGATGGTGTGTACACCAAATGATACTGCATCGGAGATAAAAATTCCTGCTGTTATGTTGCCAAAGACTGCAGGTGCAAGTTTCCAAAGAAGATTGAAGGAAGGTGGATCAGTTGGAGTAGTCATCTACTCACCTGACCGCCCCTTGGTGGATATTGCGGAAGTTTTTCTATGGCTTATGGCTGTGGGAACTATTCTGTGTGCTTCCTTTTGGTCAGCATGGAGTGCTAGAGAGGCATGCAATGAACACTGCAAGTCATTAAAGGATGATCCAGATGCTTTTGTCATTGAAGAAGATAGTGGGGATAAGGGTGTGGTTGATATCAGCACAACATCTGCAATTATTTTTGTAGTGATTGCATCATGCTTTCTAATTCTCATCTATAAATTCATGTCATTGTGGTTTCTGGAGCTTTTGGTCGTTATCTTCTGTATTGGTGGAGTTGAGGGTATGCAAACTTGTTTGGTTGCCTTGCTCTCCAGGTGGCTCACTCGTGCGAGAAGACTATATGTACACATACCTTTCTGTGGAGCTGTTTCAGCATTAACTTTGGCTGTGCTGCCATTTTGTATAACATTTGCTGTTGTATGGGCTGTTTATCGACGTAACTCATTTGCTTGGATTGGTCAAGATATACTCGGCATCACTTTGATCATAACTGTTCTTCAAATTGTACGGCTTCCTAATGTGAAGGTATCTACAGTTCTTCTAGGTTGTGCCTTTCTGTATGACATCTTTTGGGTGTTTGTTTCACATAAACTATTCCACGAAAGTGTGATGATTGTGGTTGCTCGTGGTGATAGAAGTGGAGAGGACGGCATACCCATGCTACTGAAAATTCCACGTTTGTATGATCCATGGGGTGGTTACAGCATCATTGGCTTTGGAGACATACTTTTACCAGGACTGCTGATAGCCTTTGCTTTAAGATATGATTGGGCAGCTAAGAAGACTTTGCAAGGAGGCTATTTTCTGTGGTCCATGATTGGCTATGGCTTTGGGCTGTTCATTACATATGTTGCTCTGAATCTGATGGATGGAAATGGACAACCTGCTCTTCTGTATATTGTTCCTTGTACCCTTGGCACTGTTATAACCTTGGGATGGTTGCGTGGTGAACTAAGTAATTTATGGTCAGAGGGAGAGCCTCGAATGCCTTGCCCACATATTGGACTCAAGGTTGGCACATGAGTTCAGGGATGATGTTCTTTGCAGAGATTTATGGTCAAAGGCAGAGCCTCAAATGCCTTGCTCACATATTGGACCTAAGGTTGGCTCATGAGTTCAGGGATGGTTTTCTTTGCAGAGAATTTTCCTGCTTGAGTTGCATTCAAATCTGTACATTTTATCTTTACATTAATTTTATCAAATGCAATGCTAAGCATTAGCCAAGCTTGGATGCTCATGTCCTACTATTATCTGGTTCCTGCAGACAGTAACTTTTAGAATGTGGCATTTCCATCTAAGGAATATTAGTGCTGATTATATGCATGATAAGTTTATTTTAACCTACAAAATGCTCAAAAGCAGACTTTATCAGTCTAGTGAAAAGCATTTCTGATCTTTATTGAGAATTCTTTTTATACCTGCATGAAATTGTACAGAGAAAGGAGTCCAACAAAATAGATTTTCAATTAAAATGAAATTCTTTTCGTTGCGTCATAATGAATATTCTTAGAGATCTTGGTGCTCGAGGTTTACTGTTTCTTATTGTAAAATTGAATATTTTGAAGAGAAGAA

Ace file of the UniGene sp_v1.1_unigene5430

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peptidase_A22B multi-domain protein	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	protease-associated domain-containing protein	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	endosome	GO:0005768	Cellular Component	0.0	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	81%

Source	InterPros	Term	Type	Identity
Blast2go	Protease-associated domain, PA	IPR003137	-	81%
Blast2go	Peptidase A22, presenilin signal peptide	IPR006639	-	81%
Blast2go	Peptidase A22B, signal peptide peptidase	IPR007369	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9U6

Fln msg: Overlapping hits, possible frame ERROR between 421 and 415,

Fln protein: MMDPRLLFPGVAVVFLLLLFSQGGLCGDIVHDDKSPKQPGCENKFVLVKIQTWINGRxxxxYVGVGARFGTPVVSKEKAANKSRLVLADPYDSCTTLREKLTGEAVLVHRGNCTFTTKAKFVQAAGAVAILVINDREELYKMVCTPNDTASEIKIPAVMLPKTAGASFQRRLKEGGSVGVVIYSPDRPLVDIAEVFLWLMAVGTILCASFWSAWSAREACNEHCKSLKDDPDAFVIEEDSGDKGVVDISTTSAIIFVVIASCFLILIYKFMSLWFLELLVVIFCIGGVEGMQTCLVALLSRWLTRARRLYVHIPFCGAVSALTLAVLPFCITFAVVWAVYRRNSFAWIGQDILGITLIITVLQIVRLPNVKVSTVLLGCAFLYDIFWVFVSHKLFHESVMIVVARGDRSGEDGIPMLLKIPRLYDPWGGYSIIGFGDILLPGLLIAFALRYDWAAKKTLQGGYFLWSMIGYGFGLFITYVALNLMDGNGQPALLYIVPCTLGTVITLGWLRGELSNLWSEGEPRMPCPHIGLKVGT*

Protein Length: 538

Fln nts: ATGGGAACATGTGCAGGAGCCAGCTGCATAAACGCACAGAGAGATACGATGCAAATGCAGAGAGATACGACGCAAATGCAGCTCATATGTGGATAATAAAGCGCTAGAGATTTTTAATTGAGCTCAACAACAGGCGGCTCCAAGGAGGTCGCGTGTTCGACAATTTCCTTTGCCTGAGGTCGTGTGTTCGACTCTCCGGAACGGCGAAACCTGTTAATTCCGTGTCTTATGCGTTTGCCAG_-_ATGATGGATCCTCGTTTACTATTTCCTGGCGTTGCTGTAGTGTTCCTGCTTTTACTCTTCTCGCAGGGTGGACTGTGCGGCGACATTGTTCATGATGACAAATCGCCTAAGCAGCCTGGCTGTGAAAACAAATTCGTACTGGTGAAAATTCAGACATGGATAAATGGCAGGxxxxxxxxxxxxTATGTTGGAGTTGGTGCTCGGTTTGGTACGCCTGTGGTATCAAAGGAGAAAGCTGCGAACAAGTCTCGTCTTGTCCTAGCTGACCCCTATGATAGCTGCACCACCCTAAGAGAAAAGCTTACCGGAGAGGCTGTTTTGGTGCATCGAGGCAATTGCACTTTCACAACAAAGGCCAAGTTTGTACAGGCAGCTGGTGCTGTAGCTATTCTTGTTATAAATGACAGAGAAGAGCTTTATAAGATGGTGTGTACACCAAATGATACTGCATCGGAGATAAAAATTCCTGCTGTTATGTTGCCAAAGACTGCAGGTGCAAGTTTCCAAAGAAGATTGAAGGAAGGTGGATCAGTTGGAGTAGTCATCTACTCACCTGACCGCCCCTTGGTGGATATTGCGGAAGTTTTTCTATGGCTTATGGCTGTGGGAACTATTCTGTGTGCTTCCTTTTGGTCAGCATGGAGTGCTAGAGAGGCATGCAATGAACACTGCAAGTCATTAAAGGATGATCCAGATGCTTTTGTCATTGAAGAAGATAGTGGGGATAAGGGTGTGGTTGATATCAGCACAACATCTGCAATTATTTTTGTAGTGATTGCATCATGCTTTCTAATTCTCATCTATAAATTCATGTCATTGTGGTTTCTGGAGCTTTTGGTCGTTATCTTCTGTATTGGTGGAGTTGAGGGTATGCAAACTTGTTTGGTTGCCTTGCTCTCCAGGTGGCTCACTCGTGCGAGAAGACTATATGTACACATACCTTTCTGTGGAGCTGTTTCAGCATTAACTTTGGCTGTGCTGCCATTTTGTATAACATTTGCTGTTGTATGGGCTGTTTATCGACGTAACTCATTTGCTTGGATTGGTCAAGATATACTCGGCATCACTTTGATCATAACTGTTCTTCAAATTGTACGGCTTCCTAATGTGAAGGTATCTACAGTTCTTCTAGGTTGTGCCTTTCTGTATGACATCTTTTGGGTGTTTGTTTCACATAAACTATTCCACGAAAGTGTGATGATTGTGGTTGCTCGTGGTGATAGAAGTGGAGAGGACGGCATACCCATGCTACTGAAAATTCCACGTTTGTATGATCCATGGGGTGGTTACAGCATCATTGGCTTTGGAGACATACTTTTACCAGGACTGCTGATAGCCTTTGCTTTAAGATATGATTGGGCAGCTAAGAAGACTTTGCAAGGAGGCTATTTTCTGTGGTCCATGATTGGCTATGGCTTTGGGCTGTTCATTACATATGTTGCTCTGAATCTGATGGATGGAAATGGACAACCTGCTCTTCTGTATATTGTTCCTTGTACCCTTGGCACTGTTATAACCTTGGGATGGTTGCGTGGTGAACTAAGTAATTTATGGTCAGAGGGAGAGCCTCGAATGCCTTGCCCACATATTGGACTCAAGGTTGGCACATGA___GTTCAGGGATGATGTTCTTTGCAGAGATTTATGGTCAAAGGCAGAGCCTCAAATGCCTTGCTCACATATTGGACCTAAGGTTGGCTCATGAGTTCAGGGATGGTTTTCTTTGCAGAGAATTTTCCTGCTTGAGTTGCATTCAAATCTGTACATTTTATCTTTACATTAATTTTATCAAATGCAATGCTAAGCATTAGCCAAGCTTGGATGCTCATGTCCTACTATTATCTGGTTCCTGCAGACAGTAACTTTTAGAATGTGGCATTTCCATCTAAGGAATATTAGTGCTGATTATATGCATGATAAGTTTATTTTAACCTACAAAATGCTCAAAAGCAGACTTTATCAGTCTAGTGAAAAGCATTTCTGATCTTTATTGAGAATTCTTTTTATACCTGCATGAAATTGTACAGAGAAAGGAGTCCAACAAAATAGATTTTCAATTAAAATGAAATTCTTTTCGTTGCGTCATAATGAATATTCTTAGAGATCTTGGTGCTCGAGGTTTACTGTTTCTTATTGTAAAATTGAATATTTTGAAGAGAAGAA

Fln Alignment:

sp_v1.1_unigene5430___MMDPRLLFPGVAVVFLLLLFSQGGLCGDIVHDDK-SPKQPGCENKFVLVKIQTWINGRExxEYVGVGARFGTPVVSKEKAANKSRLVLADPYDSCTTLREKLTGEAVLVHRGNCTFTTKAKFVQAAGAVAILVINDREELYKMVCTPNDTASEIKIPAVMLPKTAGASFQRRLKEGGSVGVVIYSPDRPLVDIAEVFLWLMAVGTILCASFWSAWSAREACNEHCKSLKDDPDAFVIEEDSGDKGVVDISTTSAIIFVVIASCFLILIYKFMSLWFLELLVVIFCIGGVEGMQTCLVALLSRWLTRARRLYVHIPFCGAVSALTLAVLPFCITFAVVWAVYRRNSFAWIGQDILGITLIITVLQIVRLPNVKVSTVLLGCAFLYDIFWVFVSHKLFHESVMIVVARGDRSGEDGIPMLLKIPRLYDPWGGYSIIGFGDILLPGLLIAFALRYDWAAKKTLQGGYFLWSMIGYGFGLFITYVALNLMDGNGQPALLYIVPCTLGTVITLGWLRGELSNLWSEGEPRMPCPHIGLKVGT
D5A9U6______________MMDLRLRFCGFAIACLILLFSQHGLCGDIVHDDDIAPKQPGCENKFVLVKIQTWINGRKxxEYVGVSARFGAPVVSKEKDANKSRLVLANPYDSCTNLTEKLTGDAALVHRGNCTFTTKAKVAQAAGAVAILVVNDKEELYKMVCAKEDPASDIKIPAVMLPKTAGASFKKRLKAGGSVGVVIYSPDRPLVDIAEVFLWLMAVGTILCASFWSAWSAREACNEHCKSLKDDSDAFVMEENSGDKGVVDISTTSAILFVVIASCFLVLIYKFMSEWFLILLVIIFCIGGVEGLQTCLVALLSRWFTRARRLHIHIPFFGAVSALTLAVLPFCITFAVVWAVYRRISFAWIGQDILGITLIITVLQIVRLPNVKVSAVLLSCAFLYDIFWVFVSPKLFHESVMIVVARGDKSGEDGIPMLLKIPRLYDPWGGYSIIGFGDILLPGLLIAFALRYDWAAKKSLQGGYFLWSMIGYGFGLFMTYVALNLMDGNGQPALLYIVPCTLGTVLTLGWLRGELSNLWSKGEPQMPCPHVGPKVGT

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
19	75		25		0.996473
33	80			20	0.995493
34		80	20		0.995493
36		80	20		0.995493
57		20		80	0.995493
115	12			87	0.992554
117	87		12		0.992554
118	75	12	12		0.975346
119			12	87	0.992554
120			12	87	0.992554
124		81	18		0.999994
125			18	81	0.999994
126		81	18		0.999994
733	87			12	0.992554
2025		1		94	0.960243
2164		13		86	1.0
2167	4			86	0.999642
2296		33		66	0.997452
2321	33			66	0.997452
2323	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain