SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5425

Length: 1354 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene5425 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	rab geranylgeranyl transferase like protein; K14050 geranylgeranyl transferase type-2 subunit alpha [EC:2.5.1.60]	-	-	1.99993e-41	38%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	48%
Blast2go	rab geranylgeranyl transferase like protein	-	-	0.0	63%

Source	ECs	Term	Type	e value	Identity
AutoFact		EC:2.5.1.6-	-	1.99993e-41	38%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	0.0	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	0.0	63%
Blast2go	Protein prenyltransferase	IPR008940	-	0.0	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6H143

Fln msg: your sequence is shorter than subject: 273 - 704

Fln protein: TLDREIKVCRELLEIEMDSKWAKITLARLLIAQDMLSGGSILRNKRMHTDEVLQLFNDLIEIDPSHAEYYKDQFSLILLDKVSSRKQNLQEYCWDSKGTGSLSNGERNKWLRLHGLSLSRIGSLEKLLWVQRLDISHNRLRSIEGLEALQLLGCLNLSHNLLANFTALGPLRQIKTLRALNIAYNKIGAHTVNSTRFSFPSALNNSSISNGDTTRDADEENLEISWEITVAFKGLHLRQLDIAGNPANDEKCRRLLMKTLPSLKWLDGTSIN*

Protein Length: 274

Fln nts: AAACATTGGACAGGGAGATTAAGGTTTGCAGGGAGCTACTTGAGATAGAAATGGACAGTAAATGGGCAAAGATTACACTTGCAAGATTGTTGATAGCACAGGACATGCTGTCCGGTGGTTCCATACTCAGAAATAAAAGAATGCATACAGATGAGGTTTTGCAGTTATTTAATGACTTGATTGAAATTGACCCCTCACATGCAGAGTATTATAAGGACCAGTTCAGCTTGATTCTCCTTGATAAGGTAAGTAGCAGAAAACAAAATCTCCAGGAATATTGCTGGGATTCAAAAGGTACAGGTTCACTTTCAAATGGAGAACGAAACAAATGGTTACGATTGCATGGCTTGTCATTATCCAGAATTGGGTCTCTAGAGAAGTTATTATGGGTGCAGAGGCTGGATATTAGTCATAACAGGCTCCGGTCAATAGAAGGACTGGAGGCTTTGCAGCTGCTGGGTTGTTTGAATCTCAGTCACAACCTGCTTGCCAATTTTACAGCTTTGGGACCTTTGAGACAGATCAAGACGTTAAGGGCATTGAATATTGCATACAACAAAATTGGAGCACATACTGTGAACTCCACAAGGTTTTCTTTTCCTTCTGCACTGAATAATTCCTCTATCAGCAATGGAGATACCACCAGAGATGCAGACGAGGAGAATCTGGAAATTTCGTGGGAAATCACAGTAGCATTCAAAGGCTTGCATTTGAGACAGCTTGATATTGCAGGCAATCCTGCTAATGATGAAAAATGTAGGAGGCTGTTGATGAAAACACTTCCTTCACTCAAATGGCTTGATGGCACTTCCATAAATTGA___TGCAGTTTGTCTCAGTATAGCATATTTTCAGCCTGTAGATGAAGTTCTGTTTATGATAAAGCTTGCTTGAAAGTGATGCCTTGGGACTCCTTCCACTTGCAGGCAATTGAAACCGTTGAAATGGTGATAATAATTAATTAAGAATTTGCAACTTATATTGAAGACAAAATTTGATGTTTACAATTTGGTGGCTAGCTGCATGGTTCCATCTATCATACTGGCACAGTCAGCTATAGTGTTCAGTAATTTGTATTGGTCTAACAATGTTCAAGTGGAAGTACCAATGTAACAACTACTGACGTTCTGCACAAAGTTATAGGTCGAGGCCATGGTATTGGTTCTGCATTACTCGCGCTGACATTTCATTAATTAGATTAATCTATATTTCTTTATCAATTTGAGTATTACTAGAATACCAGAAACAGTTACTCTAATACCCCTCAAGAATATCAAGTGAAGTTTTGTTGCACGCTGAATATATGTATGTCAATTCAGCCTGGAAGAATAATCCTTGCACATTAGTGGCCATAAAA

Fln Alignment:

sp_v1.1_unigene5425___TLDREIKVCRELLEIEMDSKWAKITLARLLIAQD-MLSGGSILRNKRMHTDEVLQLFNDLIEIDPSHAEYYKDQFSLILLDKVSSRKQNLQEYCWDSKGTGSLSNGERNKWLRLHGLSLSRIGSLEKLLWVQRLDISHNRLRSIEGLEAXXXXXXXXXXXXXLANFTALGPLRQIKTLRALNIAYNKIGAHTVNSTRFSFPSALNNSSISNGDTTRDA-DEENLEISWEITVAFKGLHLRQLDIAGNPANDEKCRRLLMKTLPSLKWLDGTSIN
F6H143______________TLVNEIALVRQLLS-EIDCKIGKLTLARLLMAHDAMVSYMAPHSHKKVHSEEVLQLYSDLMELDPMHSQYYKEAQSLVLLQQVTSNRESLLKHCCHHRVSTSSSVGN-SVCLRLNNLSLSRIGCVEQLLWVQMLDLSHNELRSIDGLEAMQLLSFLNLSHNKLSSFTALEPLRLLKLLKVLDISYNEIGAHPVDTRRYLCSSPLSHTVGSDWNFNEFVPDDAKVTNYWEAFAIFRGFNLTQLDIVGNAITDEKFKSFLIKVLPTLKWVDGEELH

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1211		14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain