SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5421

Length: 1647 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5421

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	gamma-soluble nsf attachment protein, putative	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NSF attachment protein	IPR000744	-	0.0	80%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRI5

Fln msg: your sequence is longer than subject: 302 - 223

Fln protein: MAQSEAKLAEAEKMMKKADKLTKLSFTRWKAEWNTATPLYEQAALAFRFAKENAKAKEAYEKAATGQERLSSPWQAAKHFESAGALAKELENWNEVADFYKRACELYTECGKAQPASDALARGARALEDAVPDEAVRMYIDSCGILEDEGKEQMAFDTYRAVTNLYLKLERFSDAATILLRWGLAADKCKAINSQCKAYLSAIIVYLYAHDIKQAEQCYNDCSQIYAFFNSEQNYCAEKLLQAYREADVEEIKHIAQSNSAISNLDHMIVRLARKLPTGDVNAVPSSSATEEEPLNENDLT*

Protein Length: 303

Fln nts: CGTCGTGACCTTGGCTGTCACTGAGGTTTAGCCTTTCTGCTTTAAAATACTCATTTCACAAGATGCCTGTTTAGGACTCGCGTAAATTGCTGGCATTAAGCAAACTCTGCTCCTCACATCTTCGCACTGAAATTTCTTGaCTGGAACATCGTATCGCT_-_ATGGCACAAAGCGAGGCAAAGCTAGCGGAAGCCGAGAAGATGATGAAGAAGGCGGATAAGCTGACGAAGTTAAGCTTTACGAGGTGGAAAGCTGAATGGAACACTGCTACTCCTTTGTATGAGCAGGCAGCTCTTGCATTCAGATTTGCCAAAGAAAATGCAAAAGCAAAAGAAGCATATGAAAAAGCTGCAACTGGACAAGAGAGGCTCTCATCACCATGGCAGGCTGCCAAACACTTTGAATCAGCTGGAGCTTTAGCCAAGGAACTTGAAAATTGGAATGAAGTTGCCGATTTTTATAAAAGGGCTTGTGAGCTGTACACAGAATGTGGGAAAGCACAGCCTGCTTCGGATGCACTTGCAAGGGGGGCACGTGCTCTGGAGGATGCTGTACCTGACGAGGCTGTCCGGATGTATATTGATTCTTGTGGCATACTTGAAGATGAAGGCAAGGAGCAAATGGCCTTTGATACATACCGTGCTGTTACTAACCTATATCTGAAGTTGGAAAGGTTCAGTGATGCAGCAACGATTCTTTTGAGATGGGGTTTAGCAGCAGATAAATGTAAAGCTATTAATAGTCAATGCAAGGCATACTTGAGTGCAATTATTGTGTATCTCTATGCACATGACATCAAACAAGCTGAGCAATGCTATAATGACTGTTCCCAGATTTACGCCTTTTTCAACAGTGAACAAAATTATTGTGCTGAGAAATTGCTTCAAGCATACAGAGAAGCTGATGTTGAAGAAATCAAGCATATAGCTCAATCAAACAGTGCCATCTCTAATCTTGATCACATGATTGTTAGACTTGCAAGGAAGCTACCAACAGGCGATGTGAATGCAGTGCCTTCGTCATCTGCTACAGAGGAAGAGCCTCTTAATGAGAATGATCTTACATAA___GAGTGTCAGGTTGTACAGAATTGCTCAAGTGACCTTTCCGACACATCTAGTTCCAATATAATCTACTTGGCACTCCAGTTAAATATGGACATCGTCATGGGATGAATGTTGTGCGATTTGAAAGAACATTCTATTGACTTGTAGAAATTTTTTTGCTTTGAGCCGGTTAGACATAGGGCTCAAATGTATTTAACACTTACTAGGTCCTGACGTTCTCATTGTGGCTTAGCAGCTCCCCACACTAGCTGTGGTATGTATTATGACATGGTCGTAATGGCCTGGGACATAGTCTGAATTCTCGACCTTTAATGTTCTACGTGAACAGTAAATGCCCAATAGTTGACCACTGCATGCCTCAAAGAAAGGGATGGTCTTACCGTTAGTTATCAAAATTAGCTATAAAGATATAATGAAAGCATATAAAGATACAACGAAATCACGCAAGAAACATGTTTAGGATAATTTCGAGATTTGGGAGCTCTAGGGCTACAATCATGCTAAAGTTTGTGGCTCAAATTATGACATGTTTCCATGCATTCGAAAATGTGGCCATACTGAGTTTAAGTTGTTCCAAATAAAATTC

Fln Alignment:

sp_v1.1_unigene5421___MAQSXXXXXXXXXXXXXXXXXTKLSFTRWKAEWNTATPLYEQAALAFRFXXXXXXXXXXXXXXXTGQERLSSPWQAAKHFESAGALAKELENWNEVADFYKRACELYTECGKAQPASDALARGARALEDAVPDEAVRMYIDSCGILEDEGKEQMAFDTYRAVTNLYLKLERFSDAATILLRWGLAADKCKAINSQCKAYLSAIIVYLYAHDIKQAEQCYNDCS
B8LRI5______________MAQSDPKLAEAEKMMKKADKLTKLSFTRWKAEWNTATPLYEQAALAFRFAKENTKAKEAYEKAATGQERLSSPWQAAKHLESAGALAKELENWNEVADFYKRACELYTECGKPQPASDALARGARALEDAVPDEAVRMYIDSCGMLEDEGKEQMAFDTYRAVTNLYLKLERFSDAATILLRWGLAADKSKAIHSQCKAYLSAIIVYLYAHDIKQAEQCYNDCS

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
514		14		85	0.993533
532	83		16		0.994512
785	12		87		0.992554
804	10	90			0.90298
809		90	10		0.90298
827		12		87	0.992554
837	87		12		0.992554
841		90	10		0.90298
843		11		88	0.923564
844	11			88	0.923564
845		11		88	0.923564
907		10		90	0.90298
909	90			10	0.90298
910	90	10			0.90298
912	90			10	0.90298
913	90		10		0.90298
915		10		90	0.90298
917	90			10	0.90298
918	90			10	0.90298
920		90	10		0.90298
921	90	10			0.90298
923	90		10		0.90298
925	90	10			0.90298
926	10		90		0.90298
1076	33		66		0.997452
1077		33		66	0.997452
1078	33			66	0.997452
1079		33	66		0.997452
1082		66		33	0.997452
1414		10		90	0.90298
1500	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain