SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5381

Length: 2200 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene5381
ATGGGGGCATGAGCAATGGTTGTTTACCAGCTGTTGAGAAACTAAAGTAAATTTTGGTAACATCCCAACACAAATCAGGGAAAAAGGCGTCGTACCTTGGGTGTCACTCTGTTGTTATCCTTGTTTATCCATTTAATGAATGCAAAGGCTTGAGGCCTCACTGAAGGCTCAGGTCCAGCCATGGCCTCTTACACCCATACTAGTCAAATACATATATCACCAGTAACTCTCGATTCCCTTGCATCTACACAACTAAAACACCTTCATCGGTCATGGGCGTGTTGCAGAAATCCTCGGTGGAATAGATTACAGAAAATATTTCTCAGAAGGGGAAGAAGTAGATGGCAGTCCAAGAGAATGGCAGTCAGGGCTTCGAATTCAGATGCCAATGCCACAAAAAAGGCGAATGTCGTGGACGAAGAGGCCAAAGCAAGGGCTCGTGACTTCTTTGAGAAAGTGCGAGAGGCTGAGCGAAAAAGAGTGGAAGAATTAAATGAACTAGAAAGGAAGGGAAGGATACAGTTTGAGAGAGAACATATACTTGCCACAGCATGGAGCAAGCCATTACTGAAGTTGCAGGGGAAGCTTAAAGGAACTGCTTGGGATCCAGAGCCTTCACACGATATTCCTTACAGTGAGTTCCAGAAGCTTCTGGAAAAACATCGAGTTCGTTACATGGAATATGGCAACTTGGGCCAATCAGTTGCAGTTGTGTTGCCCTATTACAAAGATGGTAGGGTTACAACTGGCCAAGCAGAGGAGTCGTGAAAGAGGCAGGAACGCAATTGTATTTCGACGTCATGTTGTTCAGCAGATGCCTGTTGATTGTTGGACTGACATTTGGAAAAAATTGCATCAACAACTAATCAATGTAGACATTGTGAAGATAAATGTACCTTCCCAAATATATCCAACAATTGCCGTTTCAGTTGTATGGGCCATGCGGATTGGTATTATAGTTTTCTTATATCTGAGGCTTGACAGCATTCTAGAAAAGTTTTATGCAAGGAATGAGCCTGAGCGTCCAGAAATCGAAGGGCTCAGCCTTTCTAATAGTTTTGGAGACCTGGGATTTCTTGGGCAGAGCAGGGCAAAATTCGTCTCCGCAGAGGAAAGGACAGGTGTGACATTTGATGATTTTGCTGGACAGGAGTATGTTAAGCGTGAATTACAGGAAATTGTGAAGCTATTGAAGGACAGCCAAGAATATGAGGGTGCTAGTGTCTACTGTCCAAAAGGAGTGCTTCTGTTTGGACCACCTGGCACTGGTAAAACACTCTTAGCAAAGGCCATTGCTGGAGAAGCAGGCATTCCATTTTTCTCTGCCAGTGGGTCTGAGTTTGTTGAGATGTTTGTTGGTGTGGCCGCAGCTCGTGTTAGGGATCTTTTTTCTCGCGCAAGGGAGTATGCACCTTCCATTATATTCATTGATGAAATTGATGCTATTGGTGCCAAACGTGGTGGACCTGATTTTGGTGGGGTGGTGTGGAAAGGGAGCAAGGTCTGGTTCAGATTCTCACTGAGTTGGATGGTTTCAAAGCTTCCGAAACAAAGGTGCTTGTGGTGGGTGCCACAAACAGATTGGACATGTTGGACCCTGCTCTTCTGAGAAAAGGTCGATTTGACAGGGTTATACATATTGACACACCATCAGATGAAGGCAGGCTGGAAATCTTAAGGGTTCATGCAAAGAACAAGGCTTTTAGATCAGAAGAAGAAAAGGAGAACTTACTGAAGGAAGTTGCTAAACTTGCAGATGGTTTCAGTGGAGCAGAGCTTCAAAATGTTCTGAACGAGGCTGGAATCTTGTGTTTAAGGAAGGAAAAGGACTACATTGAAAAGGAAGAGCTAATAGAAGCATTGAAGAGGCAAGAAGGGACATTTTCAACAGGTCAGGAGGATCATGTTGAAATTCCTCTGGAATTGAAATTGCGATTAGCGTATCGAGAGGCTGCAATTGCTATCCTTGAATGCTATTACCCTAATCCACATCGTCCTTTCATCAAGACAGATATTCGTATGGTGGACAGTCAGCCCAACATGCAGTATAATGAACCAAAAAATCATGTTTTTGCGAGAAAATCTGATTATGTCAGCTCAATAGTCCGTGCTTGTGCTCCAAGGCTCATTGAGGAGGAAATATTCGGGAAAGACCACTTATCTTGGTTATCAGGAACAGCCCTTTCAGAAGCTGGTGTGT

Ace file of the UniGene sp_v1.1_unigene5381

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AAA-type ATPase family protein	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	cell division protein	-	-	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AAA+ ATPase domain	IPR003593	-	0.0	73%
Blast2go	ATPase, AAA-type, core	IPR003959	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ75

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 105 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 309 - 695

Fln protein: MATWANQLQLCCPITKMVGLQLAKQRSRERGRNAIVFRRHVVQQMPVDCWTDIWKKLHQQLINVDIVKINVPSQIYPTIAVSVVWAMRIGIIVFLYLRLDSILEKFYARNEPERPEIEGLSLSNSFGDLGFLGQSRAKFVSAEERTGVTFDDFAGQEYVKRELQEIVKLLKDSQEYEGASVYCPKGVLLFGPPGTGKTLLAKAIAGEAGIPFFSASGSEFVEMFVGVAAARVRDLFSRAREYAPSIIFIDEIDAIGAKRGGPDFGGVVWKGSKVWFRFSLSWMVSKLPKQRCLWWVPQTDWTCWTLLF*

Protein Length: 310

Fln nts: ATGGGGGCATGAGCAATGGTTGTTTACCAGCTGTTGAGAAACTAAAGTAAATTTTGGTAACATCCCAACACAAATCAGGGAAAAAGGCGTCGTACCTTGGGTGTCACTCTGTTGTTATCCTTGTTTATCCATTTAATGAATGCAAAGGCTTGAGGCCTCACTGAAGGCTCAGGTCCAGCCATGGCCTCTTACACCCATACTAGTCAAATACATATATCACCAGTAACTCTCGATTCCCTTGCATCTACACAACTAAAACACCTTCATCGGTCATGGGCGTGTTGCAGAAATCCTCGGTGGAATAGATTACAGAAAATATTTCTCAGAAGGGGAAGAAGTAGATGGCAGTCCAAGAGAATGGCAGTCAGGGCTTCGAATTCAGATGCCAATGCCACAAAAAAGGCGAATGTCGTGGACGAAGAGGCCAAAGCAAGGGCTCGTGACTTCTTTGAGAAAGTGCGAGAGGCTGAGCGAAAAAGAGTGGAAGAATTAAATGAACTAGAAAGGAAGGGAAGGATACAGTTTGAGAGAGAACATATACTTGCCACAGCATGGAGCAAGCCATTACTGAAGTTGCAGGGGAAGCTTAAAGGAACTGCTTGGGATCCAGAGCCTTCACACGATATTCCTTACAGTGAGTTCCAGAAGCTTCTGGAAAAACATCGAGTTCGTTACATGGAAT_-_ATGGCAACTTGGGCCAATCAGTTGCAGTTGTGTTGCCCTATTACAAAGATGGTAGGGTTACAACTGGCCAAGCAGAGGAGTCGTGAAAGAGGCAGGAACGCAATTGTATTTCGACGTCATGTTGTTCAGCAGATGCCTGTTGATTGTTGGACTGACATTTGGAAAAAATTGCATCAACAACTAATCAATGTAGACATTGTGAAGATAAATGTACCTTCCCAAATATATCCAACAATTGCCGTTTCAGTTGTATGGGCCATGCGGATTGGTATTATAGTTTTCTTATATCTGAGGCTTGACAGCATTCTAGAAAAGTTTTATGCAAGGAATGAGCCTGAGCGTCCAGAAATCGAAGGGCTCAGCCTTTCTAATAGTTTTGGAGACCTGGGATTTCTTGGGCAGAGCAGGGCAAAATTCGTCTCCGCAGAGGAAAGGACAGGTGTGACATTTGATGATTTTGCTGGACAGGAGTATGTTAAGCGTGAATTACAGGAAATTGTGAAGCTATTGAAGGACAGCCAAGAATATGAGGGTGCTAGTGTCTACTGTCCAAAAGGAGTGCTTCTGTTTGGACCACCTGGCACTGGTAAAACACTCTTAGCAAAGGCCATTGCTGGAGAAGCAGGCATTCCATTTTTCTCTGCCAGTGGGTCTGAGTTTGTTGAGATGTTTGTTGGTGTGGCCGCAGCTCGTGTTAGGGATCTTTTTTCTCGCGCAAGGGAGTATGCACCTTCCATTATATTCATTGATGAAATTGATGCTATTGGTGCCAAACGTGGTGGACCTGATTTTGGTGGGGTGGTGTGGAAAGGGAGCAAGGTCTGGTTCAGATTCTCACTGAGTTGGATGGTTTCAAAGCTTCCGAAACAAAGGTGCTTGTGGTGGGTGCCACAAACAGATTGGACATGTTGGACCCTGCTCTTCTGAGAAAAGGTCGATTTGACAGGGTTATACATATTGACACACCATCAGATGAAGGCAGGCTGGAAATCTTAAGGGTTCATGCAAAGAACAAGGCTTTTAGATCAGAAGAAGAAAAGGAGAACTTACTGAAGGAAGTTGCTAAACTTGCAGATGGTTTCAGTGGAGCAGAGCTTCAAAATGTTCTGAACGAGGCTGGAATCTTGTGTTTAAGGAAGGAAAAGGACTACATTGAAAAGGAAGAGCTAATAGAAGCATTGAAGAGGCAAGAAGGGACATTTTCAACAGGTCAGGAGGATCATGTTGAAATTCCTCTGGAATTGAAATTGCGATTAGCGTATCGAGAGGCTGCAATTGCTATCCTTGAATGCTATTACCCTAATCCACATCGTCCTTTCATCAAGACAGATATTCGTATGGTGGACAGTCAGCCCAACATGCAGTATAATGAACCAAAAAATCATGTTTTTGCGAGAAAATCTGATTATGTCAGCTCAATAGTCCGTGCTTGTGCTCCAAGGCTCATTGAGGAGGAAATATTCGGGAAAGACCACTTATCTTGGTTATCAGGAACAGCCCTTTCAGAAGCTGGTGTGT

Fln Alignment:

sp_v1.1_unigene5381___GQSRAKFVSAEERTGVTFDDFAGQEYVKRELQEIVKLLKDSQEYEGASVYCPKGVLLFGPPGTGKTLLAKAIAGEAGIPFFSASGSEFVEMFVGVAAARVRDLFSRAREYAPSIIFIDEIDAIGAKRGGPDFGG
C0PQ75______________GQSKAKF-QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGIGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGG

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
218	16	83			0.994512
813	20			80	0.995493
815		80	20		0.995493
816	80		20		0.995493
820			83	16	0.994512
821	83			16	0.994512
822			16	83	0.994512
824		83	16		0.994512
855	85			14	0.993533
856	85		14		0.993533
857			14	85	0.993533
858			14	85	0.993533
896	83		16		0.994512
929	16		83		0.994512
1175	16			83	0.994512
1177	83		16		0.994512
1178		83	16		0.994512
1179	83		16		0.994512
1224	14	85			0.993533
1226	85		14		0.993533
1228			14	85	0.993533
1270		66		33	1.0
1316	83		16		0.994512
1435			16	83	0.994512
1438		33		66	1.0
1457	16		83		0.994512
1500	25		75		0.996473
1659		75		25	1.0
1660	75		25		1.0
1662	75	25			1.0
1665	75	25			1.0
1667		25	75		1.0
1668			75	25	1.0
1739	12	87			0.992554
1742	87		12		0.992554
1743	87		12		0.992554
1948	27		72		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain