SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5373

Length: 1163 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5373

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent clp protease, putative	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	atp-dependent clp protease atp-binding subunit clpa	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	79%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	79%
Blast2go	thylakoid	GO:0009579	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Clp, N-terminal	IPR004176	-	0.0	79%
Blast2go	Double Clp-N motif	IPR023150	-	0.0	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0H8

Fln msg:

Fln protein: MAAQMLSSATMFSAKTSPRSSHLHCPYLSPSAIKFDAIATLCSSHPLNSSYRFKLETSKSFASTWAFKCTWKPLTHFQQPRRGDQHIVMMLPTANPERTSSGKLPKWSARAVKSFSMAECEARKMRYPTTGTEALLMGILTEGTSYASKFLWANGVTLFKVRDETIKLRGKARLLFTSPERPPLTESAQKALDWAVDEKLKSGENGEVTTTHMLLGVWAQKGSTGQQILTNLGIDDTKAEELAESVRKQVALSSK*

Protein Length: 257

Fln nts: ATTGGGGATTCGGAAGTCTGAACAAGACAAATGGTTGAGGCATAGTGGGATAAGAGGGCATCATTTGAAATTCGAGGCAAGACTGCGAGCGCAAGCT_-_ATGGCTGCCCAGATGCTCTCCTCCGCAACAATGTTTTCTGCCAAAACTTCGCCCCGATCTTCGCACCTCCACTGTCCTTATCTATCTCCATCTGCAATTAAATTTGATGCCATTGCTACATTATGCAGTTCACATCCCCTAAACAGTTCTTATCGGTTCAAACTAGAGACCTCAAAATCATTTGCGAGTACTTGGGCTTTCAAATGTACCTGGAAGCCATTAACCCATTTTCAACAGCCTCGGCGAGGTGACCAGCATATAGTCATGATGCTTCCCACAGCAAACCCAGAGAGGACCTCCTCTGGCAAGCTTCCAAAATGGTCTGCTAGAGCCGTAAAATCTTTCAGCATGGCAGAGTGTGAAGCTCGCAAGATGAGATACCCTACAACTGGTACAGAAGCTCTTCTTATGGGCATTTTGACAGAAGGCACCAGTTATGCTTCCAAATTTTTATGGGCTAATGGAGTAACACTCTTCAAAGTTCGGGATGAAACTATAAAATTGCGAGGAAAAGCTCGTCTTCTTTTCACCAGTCCAGAGCGTCCACCACTAACTGAATCTGCACAGAAGGCATTGGATTGGGCTGTTGATGAGAAGCTTAAATCAGGAGAAAATGGTGAGGTAACAACTACTCACATGCTACTTGGAGTCTGGGCTCAAAAGGGCTCAACTGGTCAACAAATATTGACTAATCTCGGCATTGATGATACAAAGGCTGAAGAACTTGCAGAGTCTGTAAGGAAACAAGTTGCCTTGAGTTCAAAATAA___AGTGATTTTCTACACTTGATATATCTGTTTCAGGACACTAAATACAGGAAGAATTATGCATGTACATATTGCTTTCAAGTCTTGAGTTCATTCAGAAGTTAATGAGTTTTCAACATATAGTTCTGAACCCTAAGCAAATGTACTGTAAAACTCTTTCTAAATGGAACATGTTTACATGGGTAAGTATGCCTCATTTTACAATTTTGAAGTGCAACATTGTTTGCATATTTCTGCATATTATACATGATACCACAATGATGAGATGGATAGCTAACAAAACTTACAGCAGATGTGTTTG

Fln Alignment:

sp_v1.1_unigene5373___TMFSAKTSPRSSHLHCPYLSPSAIKFDAIATLCSSHPLNSSYRFKLETSKSFASTWAFKCTWKPLTHFQQPRRGDQHIVMMLPTANPERTSSGKLPKWSARAVKSFSMAECEARKMRYPTTGTEALLMGILTEGTSYASKFLWANGVTLFKVRDETIKLRGKARLLFTSPERPPLTESAQKALDWAVDEKLKSGENGEVTTTHMLLGVWAQKGSTGQQILTNLGIDDTKAEELAESVRKQVALSSK
A9P0H8______________TSFSAKTFTRSSQLEPPYLSPSAIKSDAIATLCSSHPLNRSFQFKPETSKSFARTWGFKCTRQPLLHPLRSRRGHQPVLMMLPTANPERASSGKLPKWSARAVKSFSMAECEARKMRYPTTGTEALLMGILTEGTSYASKFLWANGVTLFKVRDESVKLVGKSNPLFTSPERPPLTESAQKALDWAVDEKTKLGESGEVTTTHMLLAIWAEKGSTGQQILANLGIDDKKAKELAESIKEEVAVSSK

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
60		66	33		0.997452
74	25	75			0.996473
75			75	25	0.996473
76	75		25		0.996473
79		75	25		0.996473
383	88		11		0.999952
1085		10		90	0.90298
1106	11			88	0.923564
1107	11			88	0.923564
1110	88			11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain