SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5360

Length: 911 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene5360 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Vicilin-like storage protein n=1 Tax=Araucaria angustifolia RepID=Q8LKI7_9CONI	-	-	6.0e-19	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	vicilin-like storage protein	-	-	4.83448e-43	55%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cupin 1	IPR006045	-	4.83448e-43	55%
Blast2go	Cupin, RmlC-type	IPR011051	-	4.83448e-43	55%
Blast2go	RmlC-like jelly roll fold	IPR014710	-	4.83448e-43	55%

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
155	25	75			0.996473
358	75		25		0.996473
414		33	66		0.997452
427	33			66	0.997452
431		33		66	0.997452
433	33			66	0.997452
434	66		33		0.997452
435			33	66	0.997452
439		33	66		0.997452
440			33	66	0.997452
443		33		66	0.997452
545		66		33	1.0
564		80		20	0.995493
567		80		20	0.995493
588	20		80		0.995493
722	25		75		0.996473
737	75	25			0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain