SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5351

Length: 3800 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene5351
ATGGGATCCAGGGTGAAGGTAAGTTTTCTTGTACATTTGACTGTGTGGGGTAGAAGCACCCACTAAATCTAGAGGACCCAATTGGAATTTGGGGAGCTGGGCTTTCATTTTAGAGGCCAGAGGGGTTCTTCGCTGTTTATTTCTGCAATGCTGCCAATCCCTCCAGCTTGGAATCTGCTCAGATTGTCCTAAGCATTGTGCGCGACTGTTTCTTTTCTGGGTATCCAATGAGCGTTTCAATGGCATTCTGATCCTTTGCTGTGTTGAATAGATCCCACATTTTAGAGGAGCATCACTGGGTCAATAGAATTGTTGTGCTGGATTTTGCGCTGCACAGATGGATGGAGTAGTAGACATTCCTTCTGGTACCTTAATTAATGAAGAGGCTGCAGAGCAGGATGTAGACATAAATCAGAGTTTCCAGCAAACGAATGGCCATCATGAAAATGGTACTGTGTCTGATGATCCGTCCTCTCAGTTCTCTGCAGATTTAACGGAGTCTAGGAAAGAGAACAATGTGGAAGATGCAGACACAAACATGGGAAGCACAAAAATGGAATGGGCTTCAAGAACGTCCAACTCTAGCAGAGGAGATTGAATCTGAATTGCCAAGAAAAAGTGAAGGAGAAGTTGAAGTGACCTTAATAGCAAATGGGGGTTCGAACCAGACTGGGGATATGTCTGTTGAACAGGAGAAGCAGTCTAATTTAATTCTCGAAGGAGATGACGCATCAAAGCATCCTCAAACAGAAAACAATCCAATGGCTACGGAGGGGGTCAAAATGGTATCCAATCCACTTTCTACTCGGTTGAAATCAAAGAAGGTTAACTCCACTGTCCCAGAAAATGGTAGAACTACAGAATCTCAGAACCAGAGGTTAAGAAATTCTCAGAAATCAAGTACTTTCTTAAAGGGAAACCCAAAAGCTACAACCAGAAATAGTATAGATACAAATTCAAAATCTAAGAAAAATACGGTAGAGGTATCGGAAGCTGATAAATGCGAAACCATGTTGCCTGCTTCAAACAATCCCCTTCGTAGGTCAGTTAACCATGGATCTGCAAGATCAAATTACACTGTTCCACAGCCATTTGCTTTGGCAACTGACAAAAGGGCTTTTACTGGAGTTCGACCTGCTGATAATGAAATTGTTGAGGGCAAAGATAAGCGTACCGTTGCAAATAGTATCACATCATCCGCAGTTTCCAAAAAGACACAGTTGGTTGTGAGAACTGCTTCGACCCAAACACCCGGAAAATCTTTGCGTTCTGAGAGCTTGAAGGTGCATGAGCAAAGCATAAAGGTTCCCACACATGTAGATTCAAAGAATGATGAGGAGGAAGACAGCTGTTCTGTTGGCTCCTCAACTGCAACTCCAACCCAAGCTTTGAAGGACGGATCAGGCAATGGTGCCTCTGGCATTAGCTTCAGTTTTAGATGTGATGAGCGAGCAGAGAAACGGAAAGCGTTCTACTCAAAGCTAGAGGAAAAGATCCATGCAAAGGAGTTGGAAAAAAACCAATTGCAAGCCAAGTCCAAGGAAGAACAAGAGGCTGAGATCAGGCGGCTTAGGAAAAGTTTGACTTTTAAAGCCACACCCATGCCTGAATTTTACCAGGAAGCGACACCTCCAAAAGTTGAAATCAAGAAGATACCTCCCACCCGTGCAAAGTCGCCTAAGCTTGGACGTCGAAATAGTGGTAAAGAGGCTCGTTTTAGCCTTGAACAGAATAAATCCACTGGAGCCCTGCAAGAGCTCACTGAAGATGAGAATTCAGACAAGGGCTTTGGTAAAGACATTGCTTCTTCAAAGAGGGCTTTGAGAAGATCATTATCCAAGACACCTTATACAACAAAAACTCCAAAATCGAACTTTGATGAAATAAACCTAAAACAGCAGACTATAGATCAGCCAAAAGTTAAATCTGCTGTTGGGTCAACTGAAAATGGTAATCTCACTAAAACCAGGGTTCAGAATACTTTATCCAGTGTTTGCAATGAAGATAAAGTTAACTCGGAGGAGCTGGAGCCCATTAAAGAAAAAGTAAATGTTGAATCTTCACAATTGGATGATGAGATTGCCAAGATCATGGTCATTGATAATCAACCAAGTGAGCTTGATGAAGGAAGAGCAATTCTGCAGGAATATGAAGTAGTTGAAGAAAAAGATAGCACTGAACCTCTAAATGCACATAATGAGATAGTAGAAGTGGATGTTACTAATATAAGTCAACCGAGGGAATCTGATGAAGAGAGAATCGATGATCAGGGTGTGGAAGCAGTTAAAGGGATGAGCAGTGCTGAACCTTTAAATGGGCGTGATGAGATTGCAGAAGTCAAGATTAACAGTGATCAACTGATGGATTCTGATCCTCTTGTTCACACGGTTAAAGCTGTTGAAACTGGTTGTATGGAGCTAGCAGCAGATAAATTACGGGACTCACATGCCTCTAAATCCAAGAGCAATGTAAGCAAAGTGCCATTGCGTTCTAAGACTCAGAAGATAGAACAGATCCCATGTAATGGTGTAGATGCAAATGGAATAAAGATTAAATTGTCAAGGTCTAGTCAACAAGGTTCAACCCAGGAGTCCTTTGAATCAAGTGGGAAAGGCATACAGAAATCAGGACGAGAGCGATTCAAAGCAATGACACCCTCTTTGGCCAGTTCAAATAGGGAGAGTGTTAAATCCACGTCTTCTAAAAGAAGCAACAAGGGAAGCAATGACATGGCTCGAGTTGTTGGAGATGTTGCTGTACAGTCATAAATTCAAAAGTCTTTATCTCCTGGCTTTGATAAATAATTAGGGTGAAACATTCACTATTCGGGTGAAGGGGAGGCCGCTCTATGCATGTTTCTATTGTTCCGACTCTGCACATTCTGGAAATAGCTGTATTCATCAGCCTCACAATTGAAGGTACAACTGAGTCACTTCCAGATTACTCGCATGCGTTGACAAAGTGTTTGATTTCTGTGTTCATGAAAGTTTGTAGCTGTGTGCATTTTGATTAGAAGATGTGTGCCAAATAACTTGGGTTTATGTTGGACTGAGTGGCTAGTATGGTTGGGGAACTTGAACAATTGAGTTTGCAGTCTGCGGTATGAAAAAGTGGTGCTATCAATACTTATATCAATTCTTCATGATTTTTTCATTGATAAAATGTGTAGTAGTGAGTCTAGTGACAGTAGGCAGCTGTACCTAAAAGTGTGGGTTTAATTTTTTGATTACTACTGTGTACATGGTTGGAAAACCTGAAAGTATCAAAATTGTATTTTGCATGGACTGATCCAGTGTCTAGACTTGGAGGCATCTTTCACCTGTCATTTAAATAAGAACATAGTACTATGGTCGTCACTTTGTTATGATGTGAACTTAGATTTGCCCAGTACTGATGGTGGAAGTATTCTGGATATATGCTGTTACAAGCGATGCACATGCAGTAAAAATGCTTTTGCTTTCCTGGCTGTTAGTCTAATTATTGTCTTTCTTACTTGCTTATAGCTCAATGTCTGATATTTGATCATATGCGTAGCTTGTAGTTTGTTAGTGTATTGGTCATTTTAAGTTAGAATTTGTCTCTATACAAGAAGTCTTCTTTCTAAGTTTTAGGTAGGTTTGTTAGATCTAGTTGGATATGAGAGGTTCTCTCCAACTAGTTGGCTCCTATTTTGGTGTGTGGTTGAACTGTCAACAGTTCATTAGTGTGCTCAGAAAATGTCTCTATCACGAGGCATTGCTTGATGTATTTATATGTGGACAATTATTTGTTGAATAGATCATCATCACATTTGGTTTAGT

Ace file of the UniGene sp_v1.1_unigene5351

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TPX2 domain containing protein	-	-	5.0e-22	63%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	38%
Blast2go	targeting protein for xklp2 containing expressed	-	-	0.0	55%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Xklp2 targeting protein	IPR009675	-	0.0	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7T7A2

Fln msg: your sequence is longer than subject: 751 - 450

Fln protein: MWKMQTQTWEAQKWNGLQERPTLAEEIESELPRKSEGEVEVTLIANGGSNQTGDMSVEQEKQSNLILEGDDASKHPQTENNPMATEGVKMVSNPLSTRLKSKKVNSTVPENGRTTESQNQRLRNSQKSSTFLKGNPKATTRNSIDTNSKSKKNTVEVSEADKCETMLPASNNPLRRSVNHGSARSNYTVPQPFALATDKRAFTGVRPADNEIVEGKDKRTVANSITSSAVSKKTQLVVRTASTQTPGKSLRSESLKVHEQSIKVPTHVDSKNDEEEDSCSVGSSTATPTQALKDGSGNGASGISFSFRCDERAEKRKAFYSKLEEKIHAKELEKNQLQAKSKEEQEAEIRRLRKSLTFKATPMPEFYQEATPPKVEIKKIPPTRAKSPKLGRRNSGKEARFSLEQNKSTGALQELTEDENSDKGFGKDIASSKRALRRSLSKTPYTTKTPKSNFDEINLKQQTIDQPKVKSAVGSTENGNLTKTRVQNTLSSVCNEDKVNSEELEPIKEKVNVESSQLDDEIAKIMVIDNQPSELDEGRAILQEYEVVEEKDSTEPLNAHNEIVEVDVTNISQPRESDEERIDDQGVEAVKGMSSAEPLNGRDEIAEVKINSDQLMDSDPLVHTVKAVETGCMELAADKLRDSHASKSKSNVSKVPLRSKTQKIEQIPCNGVDANGIKIKLSRSSQQGSTQESFESSGKGIQKSGRERFKAMTPSLASSNRESVKSTSSKRSNKGSNDMARVVGDVAVQS*

Protein Length: 752

Fln nts: ATGGGATCCAGGGTGAAGGTAAGTTTTCTTGTACATTTGACTGTGTGGGGTAGAAGCACCCACTAAATCTAGAGGACCCAATTGGAATTTGGGGAGCTGGGCTTTCATTTTAGAGGCCAGAGGGGTTCTTCGCTGTTTATTTCTGCAATGCTGCCAATCCCTCCAGCTTGGAATCTGCTCAGATTGTCCTAAGCATTGTGCGCGACTGTTTCTTTTCTGGGTATCCAATGAGCGTTTCAATGGCATTCTGATCCTTTGCTGTGTTGAATAGATCCCACATTTTAGAGGAGCATCACTGGGTCAATAGAATTGTTGTGCTGGATTTTGCGCTGCACAGATGGATGGAGTAGTAGACATTCCTTCTGGTACCTTAATTAATGAAGAGGCTGCAGAGCAGGATGTAGACATAAATCAGAGTTTCCAGCAAACGAATGGCCATCATGAAAATGGTACTGTGTCTGATGATCCGTCCTCTCAGTTCTCTGCAGATTTAACGGAGTCTAGGAAAGAGAACA_-_ATGTGGAAGATGCAGACACAAACATGGGAAGCACAAAAATGGAATGGGCTTCAAGAACGTCCAACTCTAGCAGAGGAGATTGAATCTGAATTGCCAAGAAAAAGTGAAGGAGAAGTTGAAGTGACCTTAATAGCAAATGGGGGTTCGAACCAGACTGGGGATATGTCTGTTGAACAGGAGAAGCAGTCTAATTTAATTCTCGAAGGAGATGACGCATCAAAGCATCCTCAAACAGAAAACAATCCAATGGCTACGGAGGGGGTCAAAATGGTATCCAATCCACTTTCTACTCGGTTGAAATCAAAGAAGGTTAACTCCACTGTCCCAGAAAATGGTAGAACTACAGAATCTCAGAACCAGAGGTTAAGAAATTCTCAGAAATCAAGTACTTTCTTAAAGGGAAACCCAAAAGCTACAACCAGAAATAGTATAGATACAAATTCAAAATCTAAGAAAAATACGGTAGAGGTATCGGAAGCTGATAAATGCGAAACCATGTTGCCTGCTTCAAACAATCCCCTTCGTAGGTCAGTTAACCATGGATCTGCAAGATCAAATTACACTGTTCCACAGCCATTTGCTTTGGCAACTGACAAAAGGGCTTTTACTGGAGTTCGACCTGCTGATAATGAAATTGTTGAGGGCAAAGATAAGCGTACCGTTGCAAATAGTATCACATCATCCGCAGTTTCCAAAAAGACACAGTTGGTTGTGAGAACTGCTTCGACCCAAACACCCGGAAAATCTTTGCGTTCTGAGAGCTTGAAGGTGCATGAGCAAAGCATAAAGGTTCCCACACATGTAGATTCAAAGAATGATGAGGAGGAAGACAGCTGTTCTGTTGGCTCCTCAACTGCAACTCCAACCCAAGCTTTGAAGGACGGATCAGGCAATGGTGCCTCTGGCATTAGCTTCAGTTTTAGATGTGATGAGCGAGCAGAGAAACGGAAAGCGTTCTACTCAAAGCTAGAGGAAAAGATCCATGCAAAGGAGTTGGAAAAAAACCAATTGCAAGCCAAGTCCAAGGAAGAACAAGAGGCTGAGATCAGGCGGCTTAGGAAAAGTTTGACTTTTAAAGCCACACCCATGCCTGAATTTTACCAGGAAGCGACACCTCCAAAAGTTGAAATCAAGAAGATACCTCCCACCCGTGCAAAGTCGCCTAAGCTTGGACGTCGAAATAGTGGTAAAGAGGCTCGTTTTAGCCTTGAACAGAATAAATCCACTGGAGCCCTGCAAGAGCTCACTGAAGATGAGAATTCAGACAAGGGCTTTGGTAAAGACATTGCTTCTTCAAAGAGGGCTTTGAGAAGATCATTATCCAAGACACCTTATACAACAAAAACTCCAAAATCGAACTTTGATGAAATAAACCTAAAACAGCAGACTATAGATCAGCCAAAAGTTAAATCTGCTGTTGGGTCAACTGAAAATGGTAATCTCACTAAAACCAGGGTTCAGAATACTTTATCCAGTGTTTGCAATGAAGATAAAGTTAACTCGGAGGAGCTGGAGCCCATTAAAGAAAAAGTAAATGTTGAATCTTCACAATTGGATGATGAGATTGCCAAGATCATGGTCATTGATAATCAACCAAGTGAGCTTGATGAAGGAAGAGCAATTCTGCAGGAATATGAAGTAGTTGAAGAAAAAGATAGCACTGAACCTCTAAATGCACATAATGAGATAGTAGAAGTGGATGTTACTAATATAAGTCAACCGAGGGAATCTGATGAAGAGAGAATCGATGATCAGGGTGTGGAAGCAGTTAAAGGGATGAGCAGTGCTGAACCTTTAAATGGGCGTGATGAGATTGCAGAAGTCAAGATTAACAGTGATCAACTGATGGATTCTGATCCTCTTGTTCACACGGTTAAAGCTGTTGAAACTGGTTGTATGGAGCTAGCAGCAGATAAATTACGGGACTCACATGCCTCTAAATCCAAGAGCAATGTAAGCAAAGTGCCATTGCGTTCTAAGACTCAGAAGATAGAACAGATCCCATGTAATGGTGTAGATGCAAATGGAATAAAGATTAAATTGTCAAGGTCTAGTCAACAAGGTTCAACCCAGGAGTCCTTTGAATCAAGTGGGAAAGGCATACAGAAATCAGGACGAGAGCGATTCAAAGCAATGACACCCTCTTTGGCCAGTTCAAATAGGGAGAGTGTTAAATCCACGTCTTCTAAAAGAAGCAACAAGGGAAGCAATGACATGGCTCGAGTTGTTGGAGATGTTGCTGTACAGTCATAA___ATTCAAAAGTCTTTATCTCCTGGCTTTGATAAATAATTAGGGTGAAACATTCACTATTCGGGTGAAGGGGAGGCCGCTCTATGCATGTTTCTATTGTTCCGACTCTGCACATTCTGGAAATAGCTGTATTCATCAGCCTCACAATTGAAGGTACAACTGAGTCACTTCCAGATTACTCGCATGCGTTGACAAAGTGTTTGATTTCTGTGTTCATGAAAGTTTGTAGCTGTGTGCATTTTGATTAGAAGATGTGTGCCAAATAACTTGGGTTTATGTTGGACTGAGTGGCTAGTATGGTTGGGGAACTTGAACAATTGAGTTTGCAGTCTGCGGTATGAAAAAGTGGTGCTATCAATACTTATATCAATTCTTCATGATTTTTTCATTGATAAAATGTGTAGTAGTGAGTCTAGTGACAGTAGGCAGCTGTACCTAAAAGTGTGGGTTTAATTTTTTGATTACTACTGTGTACATGGTTGGAAAACCTGAAAGTATCAAAATTGTATTTTGCATGGACTGATCCAGTGTCTAGACTTGGAGGCATCTTTCACCTGTCATTTAAATAAGAACATAGTACTATGGTCGTCACTTTGTTATGATGTGAACTTAGATTTGCCCAGTACTGATGGTGGAAGTATTCTGGATATATGCTGTTACAAGCGATGCACATGCAGTAAAAATGCTTTTGCTTTCCTGGCTGTTAGTCTAATTATTGTCTTTCTTACTTGCTTATAGCTCAATGTCTGATATTTGATCATATGCGTAGCTTGTAGTTTGTTAGTGTATTGGTCATTTTAAGTTAGAATTTGTCTCTATACAAGAAGTCTTCTTTCTAAGTTTTAGGTAGGTTTGTTAGATCTAGTTGGATATGAGAGGTTCTCTCCAACTAGTTGGCTCCTATTTTGGTGTGTGGTTGAACTGTCAACAGTTCATTAGTGTGCTCAGAAAATGTCTCTATCACGAGGCATTGCTTGATGTATTTATATGTGGACAATTATTTGTTGAATAGATCATCATCACATTTGGTTTAGT

Fln Alignment:

sp_v1.1_unigene5351___MQTQTWEAQKWNGLQERPTLAEEIESELPRKSEGEVEVTLIANGGSNQTGDMSVEQEKQSNLILEGDDA--SKHPQTENNPMATEGVKMVSNPLSTRLKSKKVNSTVPENGR-TTES--------QNQRLRNSQK-SSTFLKGNPKATTRNSIDTNSKSKKNTVEVSEADKCETMLPASNNPLRRSVNHGSARSNYTVPQPFALATDKRAFTGVRPADNEIVEGKDKRTVANSITSSAVSKKTQLVVRTASTQTPGKSLRSESLKVHEQSIKVPTHVDSKNDEEEDSCSVGSSTATPTQALKDGSGNGASGISFSFRCDERAEKRKAFYSKLEEKIHAKELEKNQLQAKSKEEQEAEIRRLRKSLTFKATPMPEFYQEATPPKVEIKKIPPTRAKSPKLGRRNSGKEA
D7T7A2______________MRTQDKDQQTKAGDLE-PSHAISLQTHLSDTSNP----TLLPTMGMEVT-DICMDNEPNCVMIYSNGVSCDSSHETAPIHHDFAESYKHINGDPEPQILEEKVEGKEYEVKECTTESSVEISQLCQVEKCEEQEKPSSNFEADLPEEKVKSEVPKSKDDKKLKSSVKPASK-----PAV----------GSARTNYTVPQPFALATEKRASCGTRPFGTE----SDVGTVANK---SSITKNLQ-------TPTATKHNQQTSLLVPRKPLEPD---NKKHPDEEDSCSVTSSTAPSARTVKSRAIVASAPV---FRCTARAEKRKEFYSKLEEKHQALEAEKNQCEARTKEEREAAIKQLRKSLMFKASPMPSFYHEGPPPKAELKKLPPTRAKSPKLGRRKSCSDA

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
379		12		87	0.992554
569			75	25	0.996473
570	75		25		0.996473
571	75		25		0.996473
572		75	25		0.996473
573	25		75		0.996473
769			25	75	0.996473
783		40		60	1.0
832		87	12		0.992554
833	87			12	0.992554
837	12			87	0.992554
840		87		12	0.992554
841	87			12	0.992554
843	87		12		0.992554
844	87	12			0.992554
845	87			12	0.992554
846	87		12		0.992554
848		12	87		0.992554
849	12		87		0.992554
850		12		87	0.992554
851	87			12	0.992554
852		12	87		0.992554
981	90	10			0.90298
985	90			10	0.90298
987	10	90			0.90298
988	10		90		0.90298
990	90			10	0.90298
991	90			10	0.90298
992			90	10	0.90298
1042			90	10	0.90298
1384	80			20	0.995493
1761	11	88			0.923564
1765	88		11		0.923564
1860	40	60			1.0
2126	25		75		0.996473
2357	16	83			0.994512
2361			16	83	0.994512
2407	12			87	0.992554
2411	85		14		0.993533
2412			14	85	0.993533
2452		10		90	0.90298
2508	88		11		0.923564
2509	88		11		0.923564
2973			4	88	0.999262
3357		12		87	0.992554
3409	40		60		1.0
3464		20	80		0.995493
3530	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain