SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5347

Length: 1346 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5347

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1777 multi-domain protein	-	-	4.0e-08	28%
FL-Next	sp=Pectinesterase; Vitis vinifera (Grape).	-	-	0.0	82%
Blast2go	rna binding	-	-	2.14007e-14	91%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7U9X3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 322 - 769

Fln protein: WGG*SRFIFTAYI*RIRG*LMGTQFQACITLSELIS*PPSDKFDLLQSFLFAGAP*HI*RSQLAQEDDIGS*RATWRRAMAVSSSSESSSSSDSEQQQLQRSRRRRHRDKDHKSKDRHPRKSKHKRKRSESDDTSSSVSYSSYSDRSPKRRCRDESSTSGSDSEASDRPRKYRRRDKSKKTKEKSRERSHKNRRHKHKGRELGSATWLLDTFLAGQLLLAVF*CCLLMFLDCLVVGLVD*LGAKYRSRKKRVMVQCNFQSHLRYFYLSNVIQFLGRDKEDNVRRSAVSGKKILLKVDKTKEDKLAENNRSELLKFLNASYD*

Protein Length: 323

Fln nts: ATGGGGAGGTTAAAGCCGTTTTATATTCACTGCATATATATAGCGAATAAGGGGCTAATTGATGGGGACGCAATTCCAGGCGTGCATTACACTCAGCGAATTGATCTCGTGACCACCGAGCGACAAATTCGATCTGCTGCAGAGCTTTTTGTTTGCCGGAGCACCATAGCATATTTAACGTTCTCAGCTCGCTCAGGAGGACGACATAGGCAGCTGAAGGGCAACGTGGCGGAGGGCAATGGCGGTATCGTCGTCATCGGAGTCCTCTTCATCGTCTGATTCAGAGCAGCAGCAGCTCCAAAGAAGCCGCCGGCGCCGCCATAGAGACAAAGATCACAAGAGCAAGGACAGGCACCCGCGCAAATCGAAGCACAAGCGAAAGCGCAGTGAAAGCGATGACACTTCCTCTTCTGTTTCTTATTCTTCTTATTCAGATCGATCTCCCAAGCGGCGCTGCAGGGATGAAAGTTCCACCAGTGGTAGTGATTCAGAGGCATCTGATCGGCCAAGAAAGTATAGACGCAGAGACAAATCAAAAAAGACCAAAGAGAAGTCCAGGGAAAGGAGTCACAAGAACAGACGTCATAAACACAAGGGAAGAGAGCTGGGATCTGCAACCTGGTTGCTGGACACTTTCTTGGCTGGCCAACTCTTATTGGCTGTGTTTTGATGCTGCTTGCTGATGTTTCTCGACTGTCTTGTTGTGGGGCTTGTCGATTGACTGGGAGCTAAATATAGAAGCAGGAAAAAGAGAGTAATGGTCCAGTGCAACTTTCAAAGCCACCTTAGATACTTTTATTTGTCAAATGTAATTCAGTTCCTTGGGCGGGATAAAGAAGATAATGTGAGACGCAGTGCGGTCTCTGGAAAAAAGATTCTTCTGAAGGTTGACAAAACGAAGGAAGACAAATTGGCCGAGAACAACAGGAGTGAGCTTTTGAAGTTCTTGAATGCCAGTTATGATTGA___TTTGGTCTGATCTGGCCTCATTCTTCCGCAGGAGTGTGATCCACCATAACTGGTGTGATTCGTGATTAGATCAATGTTTTTTGTGTGGGTTTGTATATCACAAAATTGAAATCTATATGAATTTTGTGTGATAAAAATGAAACGCTAATGAGGAATTCTGAGATTCCAAGCCAGGACTGGCATTTTTTTTTGCATTAGGTGCTTTGTACACAGGTCTGAAATTGTTGACTATTCATGTGTAGCTTCTTGTATTTCTAAATCAGCAAGTTTTAGATTTAGCAAACATTAATTTTTCAATACAATGTTTCTTACTCAAGAGTATCAGATTTCCTGGTGTTTTTTCGAAGTAAGGATATTTAATCTTGATGCTTTCTCAGCA

Fln Alignment:

sp_v1.1_unigene5347___QFLGRDKEDNVRRSAVSGKKILLKVDKTKEDKLAENNRSELLKFLNASYD
D7U9X3______________KFLGRGKDDSVRRSAVSGKKILLKLDKSKEDKAAENKRNELLKFLNASYD

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
223		86		13	0.999973
510	88		11		0.923564
528			87	12	0.992554
529	85			14	0.993533
531	85	14			0.993533
533	85		14		0.993533
535		85	14		0.993533
537	16		16		0.988813
538	83			16	0.994512
539	83		16		0.994512
541	83	16			0.994512
544	85		14		0.993533
601	75	25			0.996473
607	25	50	25		0.995533
610	25		75		0.996473
611		25	75		0.996473
612	25	25	50		0.995533
613	50	25	25		0.995533
614			25	75	0.996473
617			66	33	0.997452
618		66		33	0.997452
619	66			33	0.997452
620	66	33			0.997452
623		66		33	0.997452
627	33		66		0.997452
628	33			66	0.997452
629			33	66	0.997452
631		66	33		0.997452
633			66	33	0.997452
824	33			66	0.997452
826		66	33		0.997452
827		66	33		0.997452
828			33	66	0.997452
844	66		33		0.997452
920		37	62		1.0
922		62		37	1.0
925	62			37	1.0
928	62	37			1.0
932	62		37		1.0
933	62		37		1.0
935	62			37	1.0
938		37	62		1.0
940		37	62		1.0
942		37	62		1.0
944	12		75		0.975346
945		87	12		0.992554
1027		85		14	0.993533
1056		25		75	0.996473
1102	33			66	1.0
1122		77		22	0.999999
1288		33		66	0.997452
1292		33		66	0.997452
1296	33		66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
285	296	AGC AGC AGC AGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain