SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5345

Length: 1385 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5345

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	unknown [Picea sitchensis]	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	85%

Source	InterPros	Term	Type	Identity
Blast2go	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	IPR000866	-	85%
Blast2go	Thioredoxin fold	IPR012335	-	85%
Blast2go	Thioredoxin-like fold	IPR012336	-	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADS3

Fln msg:

Fln protein: MAVASLFQGTSTNLHYSASSEKPVGHVGTLSSSSLVLGANINVGCKGRRSPLSLIHPDRIENAGSIAFAGKRRSSVICRVASASTSYNEADLIGPINIFTASGEPVLFKDLWDQNNGMAVVALLRHFGCVCCWEFASTLKDVKPKFDSAGVKLIAIGVGTPEKARILGERLPFPLDSLYADPDRKAYDALGLYYGLGRTFFNPASAKVLTRFDSLQKALKNYTISATPDDRSSVLQQGGMFVFKGKELLYARKDEGTGDHAPLDEVLNLCCKTPVA*

Protein Length: 278

Fln nts: GATGGGGACGTTTATGACAATCTTTCTATGCCACTTTATCCTAGAGAAGGCTACCTAGAGGCCGTGTGTACACGACAGCTGAGCTCCAGAAGCT_-_ATGGCGGTGGCATCCTTATTTCAGGGAACTAGCACAAACCTGCACTACTCTGCGTCATCTGAGAAGCCTGTCGGTCACGTGGGTACCCTATCTTCTTCATCATTGGTACTCGGGGCCAATATAAATGTGGGATGTAAAGGCAGAAGATCACCGTTGTCCTTAATTCATCCGGATAGAATTGAGAATGCGGGGAGCATTGCATTTGCGGGTAAGAGGAGGAGCAGTGTAATATGCAGGGTAGCCTCTGCATCTACATCTTATAATGAAGCAGACCTGATTGGTCCCATCAACATTTTTACTGCCAGTGGAGAACCTGTGCTGTTCAAAGACCTCTGGGACCAAAACAATGGAATGGCTGTGGTGGCTCTCCTCAGGCATTTTGGGTGTGTATGCTGTTGGGAGTTTGCTTCGACATTGAAAGATGTGAAGCCAAAGTTTGACTCGGCTGGAGTGAAGCTAATAGCAATTGGTGTAGGAACTCCGGAGAAAGCCCGTATCCTGGGTGAAAGGCTACCATTCCCATTGGACTCTCTTTATGCAGACCCAGATCGCAAGGCGTATGATGCACTTGGGTTATACTATGGTTTGGGTCGGACATTCTTTAATCCTGCCAGTGCTAAGGTCCTCACAAGGTTTGATTCCTTACAGAAAGCTTTGAAGAACTACACAATTTCTGCAACCCCAGACGATAGAAGCAGTGTATTGCAACAGGGTGGGATGTTTGTTTTCAAAGGCAAAGAATTGTTGTATGCAAGGAAAGATGAGGGTACTGGAGATCATGCTCCCCTGGATGAAGTTCTCAATCTCTGTTGCAAAACTCCAGTGGCTTAG___ACTCATTTGTCACTAAACAAGATGAAAGAGAGAAAAAACATGCTGAATTTAAGTTGGATATGTATGTGTGTATATAGTTATGTATTCAATTCATAGATCCGGTATAATGGCAGGTGCAGAGCTCCCAGGTCGCAGTGAATATGGATATGTATGGAGTTACATTTCCACCTGAAGCTTTGCCAAATCAAAGTCAAAATGTAAAAACAGAGGTTAATTATTTGCAGCATAATTTGTGTCTAGTTTAGAATCATGTCATTACTGTTAAGAATTTTCCTCGAGAACAAATACATGGATTCTTAGATTGACGATAGAACATGCTTTCTTGCCTTATATAACTTCTTGTAAAGGGGAGCAGAGTACAAACTTAAATATTAGATTATTTTTTATTGGTTTTTATGTATTTCCGTTCGGCTTACTCCATATAAATAAGAACAAGGAAATACTCCGCTAGCAAAAATTA

Fln Alignment:

sp_v1.1_unigene5345___MAVASLFQGTSTNLHYSASSEKPXXXXXXXXXXXXXXXANINVGCKGRRSPLSLIHPDRIENAGSIAFAGKRRSSVICRVASASTSYNEADLIGPINIFTASGEPVLFKDLWDQNNGMAVVALLRHFGCVCCWEFASTLKDVKPKFDSAGVKLIAIGVGTPEKARILGERLPFPLDSLYADPDRKAYDALGLYYGLGRTFFNPASAKVLTRFDSLQKALKNYTISATPDDRSSVLQQGGMFVFKGKELLYARKDEGTGDHAPLDEVLNLCCKTPVA
D5ADS3______________MAVASLLQATNTNMHPSASYVKPLSHVGTLSSSLLLLGANKNVGYKMRKIPSFLIQSDRIENVGSIAFEGKRSISVISRAASASTSYNEADLIASINIFTASGEPVQFKDLWDQKNGTAVVALLRHFGCPCCWEFASTLKDVMPKFDSAGVKLIAIGVGTPEKARILGERLPFPLDSLYADPDRKAYDALGLYYGLGRTFFNPASAKVLTRFDSLQKALKNYTISATPEDRSSVLQQGGMFVFKGKELLYARKDEGTGDHAPLDEVLDLCCKAPVS

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
22	25	75			0.996473
24			25	75	0.996473
25			25	75	0.996473
26		75	25		0.996473
27			25	75	0.996473
141		66		33	0.997452
216	66		33		0.997452
241			80	20	0.995493
242	80		20		0.995493
243			20	80	0.995493
244		80	20		0.995493
590		50		50	1.0
720	10	90			0.90298
722		90	10		0.90298
723	90		10		0.90298
724		90	10		0.90298
747			90	10	0.90298
971	13		86		0.999973
976	14			85	0.999981
1119	61		38		1.0
1166			43	56	1.0
1279		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain