SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5341

Length: 1610 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene5341 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	tetrachloro-p-hydroquinone reductive dehalogenase-related	-	-	53%
FL-Next	tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley).	-	-	56%
Blast2go	protein	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	65%

Source	InterPros	Term	Type	Identity
Blast2go	Glutathione S-transferase, N-terminal	IPR004045	-	65%
Blast2go	Glutathione S-transferase, C-terminal-like	IPR010987	-	65%
Blast2go	Thioredoxin fold	IPR012335	-	65%
Blast2go	Thioredoxin-like fold	IPR012336	-	65%
Blast2go	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F2DEA1

Fln msg: Separated hits, possible frame ERROR between 1090 and 1092,

Fln protein: MQLYQHPYSLDSQKVRLALEEKGLDYWPYSINPLKAKNLDSRIFRMNPTGKLPVFLNGQHIIFDTLSILQYIDSIHEPLGGDAVDREKMLLWMRSIDSWNPKLFTLSHVPQKYRLFFSRFQRRAAIARMAECPDLAGKYHLKLHSAYATEEELKDKELINSSNELLIKILDAAEDHLSSTDFLAGGAFSMAxxTMFIPILARINLLNLEEEYIGSRSHLLDYWNRVKKRPSYHAVIGKYFSGWRKYKTLYATYSSVWVRNLFRRY*

Protein Length: 267

Fln nts: CATCGTGACCTTGGCTGTCACTCAGTTTTTGTGCTCAAAGTTAGTTATAGGTACATTAGGCGTAAATAGATTCTTGAAGTCGGTGTTCGCAGAATAAAGTACAGAGAAAGTTATATTGTGTTTGGAGGAGGACGACTGATATTTTCCAACGGTCGGAAAATCAACAGAGTAGCAGCAGCTGTAGCCATTGCTCTTCCTGTGCTAGTTTGAGTTGGGCCCTTGGGATCGCGAGGATTGAAGTTTGAACCTTCTAGGTGCCCTGTTGATTAAGACTTTTCTGAAACATTAGGAGCGTCCTGAACACGGCGTTGGAATCTCTGTATTTGGTTCATGGAAAGGAAATCAAGCAGCCTCACCCGATTTTCCACGGATTGACTGCTTTCTGTATTTTATTCTTCACAAGAGTTCTCTTTCGCGCCTCTGTGGTTTCATGAAGAAGTGATCTTTCCTCCCAAAGTAATTTGCAGAAAGTTTGCACCAAGTTAGTGGATATGTTTTGAAGCACTTGAACGAA_-_ATGCAGCTGTATCAACATCCTTACTCATTAGATAGTCAGAAAGTGCGGCTTGCTCTTGAGGAGAAAGGCCTAGATTACTGGCCATACAGCATCAATCCTCTGAAGGCGAAGAACCTAGATTCAAGAATTTTTCGCATGAACCCAACTGGCAAACTACCTGTATTCCTGAATGGTCAACATATTATTTTTGACACACTTTCCATTCTTCAGTATATTGATAGCATACATGAACCATTAGGGGGTGATGCTGTGGACCGCGAGAAAATGCTACTATGGATGCGGTCGATAGATTCCTGGAATCCAAAGCTATTTACTCTTAGCCATGTTCCTCAAAAGTATCGACTTTTCTTTTCAAGATTCCAGAGACGAGCTGCAATTGCACGAATGGCCGAGTGTCCTGATCTGGCTGGCAAGTACCACTTGAAGCTCCACAGTGCCTATGCAACAGAGGAGGAATTGAAAGACAAGGAACTGATCAACAGTAGCAATGAACTACTAATAAAAATACTTGATGCTGCTGAgGACCAtCTTTCATCTACCGACTTTTTAGCGGGTGGAGCCTTTTCAATGGCTGAxxxGACCATGTTTATTCCAATTTTAGCTCGTATTAATCTATTGAATTTAGAAGAAGAGTACATTGGTTCAAGATCACATCTGTTAGATTACTGGAACAGGGTTAAGAAACGTCCGAGCTATCATGCGGTTATTGGAAAGTATTTTTCGGGATGGAGGAAATACAAAACACTATATGCCACCTACAGCTCTGTCTGGGTTAGAAACTTGTTCAGGAGATACTGA___ACCTTATTTTCTGGAGCTTTTCTTATGTTCTTACAGTGATCCAGAAATTGAAATCAGAGTGTGAATATCATATATTTTTGAGAAAGTTACACAATATGGGTGTAAGAGAAGGACGTCTATATGTAGGGTTGTAAATTGTCTTGTTTCATTTGGTTTTATCCATCATGGTGTTTAACAAATAATAGCATTGTCAATGACACTGTATTTGTATAGGTGCATGGCAATAGAAGCTGGTTACTGTGCTGTTTTACCAATACAATCGGTAGAATGATATCCGATTTATTTTTGTATGGAATCATC

Fln Alignment:

sp_v1.1_unigene5341___MQLYQHPYSLDSQKVRLALEEKGLDYWPYSINPLKAKNLDSRIFRMNPTGKLPVFLNGQHIIFDTLSILQYIDSIHEPLGGDAVD-REKMLLWMRSIDSWNPKLFTLSHVPQKYRLFFSRFQRRAAIARMAECPDLAGKYHLKLHSAYATEEELKDKELINSSNELLIKILDAAEDHLSSTDFLAGGAFSMADxTMFIPILARINLLNLEEEYIGSRSHLLDYWNRVKKRPSYHAVIGKYFSGWRKYKTLYATYSSVWVRNLFRRY
F2DEA1______________MQLYHHPYSLDSQKVRIALEEKGIDYTSYHVNPLTGKNMNVAFFRMNPSAKLPVFQNGAHVIFRAIDIIQYIDRLAVHLSGEIQPVNTEVLQWMQKVDGWNPKMFTLTHTPLKYRSFVSKFIRRVLIARMAEAPDLASMYHVKLRDAYETEDRLKDPETMRQSEEELSKLLDDVEAQLNKTKYLAGDEFSPADxSMFIPILARIALLDLHEEYISSRPRVLEYHTLVKQRPSYKVVIGKYFNGWKKYRTLFRTSFFLCVRTLFRKY

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1217	16		83		0.994512
1249	20		80		0.995493
1268		20		80	0.995493
1269		20	80		0.995493
1271	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain